View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16855_low_2 (Length: 395)
Name: NF16855_low_2
Description: NF16855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16855_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 60 - 395
Target Start/End: Complemental strand, 11060066 - 11059730
Alignment:
| Q |
60 |
attatcgtgtccaagtcagtgttttatagcttttaagtcactccttttatttcatgtatgttttattcttctcatgtannnnnnnn-attagggatattc |
158 |
Q |
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| T |
11060066 |
attatcgtgtccgagtcagtgttttatagcttttaagtcactccttttatttcatgtatgttttattcttctcatgtatttttttttattagggatattc |
11059967 |
T |
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| Q |
159 |
ttctcatgtattaacatccacaaaaacatacaaatagcatgcaaatggtaatttctacaaaaacatccatcactctattcatgctatataacaaaatact |
258 |
Q |
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| T |
11059966 |
ttctcatgtatcaacatccacaaaaacatacaaatagcatgcaaatggtaatttctacaaaaacatccatcactctattcatgctatataacataatact |
11059867 |
T |
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| Q |
259 |
ataggcactaggcagtataaaataacaaccataaattggatcataagcactatgttattttgaaactgattctactatgcataccacgatttgcagtagc |
358 |
Q |
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| T |
11059866 |
ataggcactaggcagtataaaataacaaccataaattggatcataagcactatgttattttgaaattgattctactatgcataccacgatttgcagtagc |
11059767 |
T |
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| Q |
359 |
ctgtgcctcagccataaacccttcataagaagcctga |
395 |
Q |
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| T |
11059766 |
ctgtgcctcagccataaactcttcataagaagcctga |
11059730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 11060156 - 11060102
Alignment:
| Q |
8 |
ccaagaatatagattgacggtgtggtacttgtgattgtatttgattacttcaatt |
62 |
Q |
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| T |
11060156 |
ccaacaatatagattgacggtgtggtacttgtgattgtatttgattacttcaatt |
11060102 |
T |
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