View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16855_low_4 (Length: 339)
Name: NF16855_low_4
Description: NF16855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16855_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 49 - 329
Target Start/End: Original strand, 3938686 - 3938943
Alignment:
| Q |
49 |
ctgcaacaagcatcctctccaagaaatggaaccaactatggctctcacttctcaatcttgattttgacgaccaaggctctccaaacttcttagcttttcg |
148 |
Q |
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| T |
3938686 |
ctgcaacaagcatcctctccaagaaatggaaccaactatggctctcagttctcactcttgattttgacgaccaaggctctccaaacttcttagcttttcg |
3938785 |
T |
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| Q |
149 |
acattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtggcttcattcaaatatgtgatccatatgat |
248 |
Q |
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| T |
3938786 |
acattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattcc------------------ttcaaagatgtgatccatatgat |
3938867 |
T |
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| Q |
249 |
atcaatcgattcatttctgttgctgtaaaacgaggaattgataatcttaccttaccttagacttgtctggcactgatgatg |
329 |
Q |
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| T |
3938868 |
atcaatcgattcatttctgttgctgtaaaacgaggaattgataat-----cttaccttagacttgtctggcactgatgatg |
3938943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 12651704 - 12651782
Alignment:
| Q |
142 |
cttttcgacattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtgg |
220 |
Q |
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| T |
12651704 |
cttttcgactttttgtctactcagtcatgctcacgcgtgacccaacctcgccaatccaatcgttccgactcaaatgtgg |
12651782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 47606642 - 47606574
Alignment:
| Q |
54 |
acaagcatcctctccaagaaatggaaccaactatggctctcacttctcaatcttgattttgacgaccaa |
122 |
Q |
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| T |
47606642 |
acaagcatcctctcaaagagatggaacccactatggctctcagttcttaattttcacttcgacgaccaa |
47606574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 220
Target Start/End: Original strand, 12504948 - 12505027
Alignment:
| Q |
141 |
gcttttcgacattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtgg |
220 |
Q |
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| T |
12504948 |
gcttttcgacttttcgtctactcagtcatgctcatccgtgaccccacattgcccatccgattgttccacctcaaatgtgg |
12505027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 12485932 - 12485994
Alignment:
| Q |
233 |
atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct |
295 |
Q |
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| T |
12485932 |
atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct |
12485994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 12507364 - 12507426
Alignment:
| Q |
233 |
atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct |
295 |
Q |
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| T |
12507364 |
atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct |
12507426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 12658250 - 12658312
Alignment:
| Q |
233 |
atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct |
295 |
Q |
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| T |
12658250 |
atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct |
12658312 |
T |
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