View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16855_low_6 (Length: 278)
Name: NF16855_low_6
Description: NF16855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16855_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 263
Target Start/End: Complemental strand, 11059689 - 11059457
Alignment:
| Q |
31 |
gttttttgaatgataatgaaggattaataaccttcatcgcctctcgactttcagtaatccgctcagacaacttcttgtaatccttctcagcttcatccat |
130 |
Q |
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| T |
11059689 |
gttttttgaatgataatgaaggattaataaccttcatcgcctctcgactttcagtaatccgctcagacaacttcttgtaatccttctcagcttcatccat |
11059590 |
T |
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| Q |
131 |
cgcttgctggcatccttgactctgcatctataaacttcttaaattagcaagatcacagttaaaaatcaacaattaatcttcattaagatctgtctccatt |
230 |
Q |
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| T |
11059589 |
cgcttgctggcatccttgactctgcatctataaactttttaaattagcaacatcacagttaaaaatcaacaattaatcttcattaagatctatctcgatt |
11059490 |
T |
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| Q |
231 |
aaaacaaatttcataacatttgatctattaact |
263 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
11059489 |
aaaacaaatttcataacatttgatctattaact |
11059457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11059694 - 11059730
Alignment:
| Q |
1 |
ttaagatttaagagactaatatatatggttgtttttt |
37 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
11059694 |
ttaagatttaagagactaatatatatggttgtttttt |
11059730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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