View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16855_low_9 (Length: 210)
Name: NF16855_low_9
Description: NF16855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16855_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 31721763 - 31721937
Alignment:
| Q |
19 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataaactttagaattagacacttgacgagcctttggaatccgtttcatac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31721763 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagacacttgacgagcctttggaatccgtttcatac |
31721862 |
T |
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| Q |
119 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattct |
193 |
Q |
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| T |
31721863 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattct |
31721937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 31711057 - 31711231
Alignment:
| Q |
19 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataaactttagaattagacacttgacgagcctttggaatccgtttcatac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711057 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataacctttagaattagacacttgacgagcctttggaatccgtttcatac |
31711156 |
T |
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| Q |
119 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattct |
193 |
Q |
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| T |
31711157 |
caaacttgttatcagtattaaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattct |
31711231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 31719164 - 31719332
Alignment:
| Q |
19 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataaactttagaattagacacttgacgagcctttggaatccgtttcatac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
31719164 |
aaggtcttagaaatctcaaatataagcctagcctcaaacgcatcaccagaataacctttag------acacttgacgagcctttggaatccgtttcatac |
31719257 |
T |
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| Q |
119 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattct |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31719258 |
caaacttgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattct |
31719332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 31716237 - 31716399
Alignment:
| Q |
25 |
ttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataaactttagaattagacacttgacgagcctttggaatccgtttcataccaaact |
124 |
Q |
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|||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
31716237 |
ttagaaatctaaaaaataagcctagcctcgaatgcatcaccagaataacctttagat------acttgacgagcctttggaatccttttcacaccaaact |
31716330 |
T |
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| Q |
125 |
tgttatcagtgtttaaggcccctcctacattaccagccaacttcaacataaagttcatatacgtattct |
193 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
31716331 |
tgttatcagtgttcaatgcccctcctacattaccagccaacttcagcataaagttcatataagtattct |
31716399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 31730222 - 31730169
Alignment:
| Q |
19 |
aaggtcttagaaatctcaaatataagcctagcctcaaatgcatcaccagaataa |
72 |
Q |
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|||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||| |
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| T |
31730222 |
aaggccttagaaatctcaaatataagtctagcctcaaaagcatcacgagaataa |
31730169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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