View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16856_high_1 (Length: 334)
Name: NF16856_high_1
Description: NF16856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16856_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 35619431 - 35619738
Alignment:
| Q |
11 |
acaaaatccgttctatattcatccttctgaaaatcctttaaatggattggggcaagaattacaatcactcaacaatgtgattacctatatcactcaacaa |
110 |
Q |
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| T |
35619431 |
acaaaatccgttctatattcatccttctgaaaatcctttaaatggattggggcaagaattacaatcactcaacaatgtgattacctatatcactcaacaa |
35619530 |
T |
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| Q |
111 |
ttaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcaggacgaggtatatatcttc |
210 |
Q |
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| T |
35619531 |
ttaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcaggacgaggtatatatcttc |
35619630 |
T |
|
| Q |
211 |
tttcctagagcctcatctttgcagattcaaggatacaagacgttccattccaggccaatgcttcttccttggtcaatcacttatctcttggagaacaaag |
310 |
Q |
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| T |
35619631 |
tttcctagagcctcatctttgcagattcaaggatacaagacgttccattccaggccaatgcttcttccttggtcaatcacttatttcttggagaacaaag |
35619730 |
T |
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| Q |
311 |
aagtaggt |
318 |
Q |
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| T |
35619731 |
aagcaggt |
35619738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 1529060 - 1528993
Alignment:
| Q |
239 |
aaggatacaagacgttccattccaggccaatgcttcttccttggtcaatcacttatctcttggagaac |
306 |
Q |
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| T |
1529060 |
aaggatactagacgttccatttcaggacattgcttctttcttgatcaatcccttatttcttggagaac |
1528993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 19813128 - 19813052
Alignment:
| Q |
90 |
attacctatatcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagt |
166 |
Q |
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||||||| ||| || |||||||| ||||| ||||| |||||||||||| | ||| |||||||| ||||||||||| |
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| T |
19813128 |
attacctttattacacaacaattgagccagtttctctccaaacctacacacattcactataatgctgctatgagagt |
19813052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 6568038 - 6567983
Alignment:
| Q |
138 |
caaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcagg |
193 |
Q |
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| T |
6568038 |
caaactcactacaatgctggtatgagagttctcaaatatctcaaaggatgtccagg |
6567983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 44666893 - 44666826
Alignment:
| Q |
99 |
atcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagt |
166 |
Q |
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||||| ||||||||||||||| |||| ||||| |||||||||||| ||||||||||| ||||||| |
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| T |
44666893 |
atcacacaacaattaagccaatttctttctaaaccaacacaaactcatcataatgcagctctgagagt |
44666826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 14040708 - 14040776
Alignment:
| Q |
99 |
atcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagtt |
167 |
Q |
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| T |
14040708 |
atcactcaacaacttagtcaatttctcagtaaacctacacatacccattacaatgctgctctgagagtt |
14040776 |
T |
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