View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16856_low_1 (Length: 508)
Name: NF16856_low_1
Description: NF16856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16856_low_1 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: scaffold0090 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 13 - 489
Target Start/End: Original strand, 9265 - 9741
Alignment:
| Q |
13 |
aatatcaaaaggactagtgaagatgtgattgataccgccaatacaacggttttagtattcgcatttttatcacctgcagttatatgatttccaaacaaaa |
112 |
Q |
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| T |
9265 |
aatatcaaaaggactagtgaagatgtgattgataccgccaatacaatggttttagtattcgcatttttatcacctgcagttatatgatttccaaacaaaa |
9364 |
T |
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| Q |
113 |
tcaatgatcatcaaaatgactgatatattcacattaagaacaataaagagaaagacaatagaagcctttaccgatgtctgatacgtccgttcgtacatat |
212 |
Q |
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| T |
9365 |
tccatgatcatcgaaatgactgatatattcacattaagaacaataaagagaaagacaatagaagcctttaccgatgtctgatacgtccgttcggacatat |
9464 |
T |
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| Q |
213 |
agatcttgtccactttgtgaaaccctcagatcgacaagatcaccgaaccagatagaacaaccgctacctgctccacttgtgtctaaacttgagtaagcag |
312 |
Q |
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| T |
9465 |
agatcttgtccactttgtgaaaccctcagatcgacaagatcaccaaaccagatagaacaaccgctacctgctccacttgtgtctaaacttgagtaagcag |
9564 |
T |
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| Q |
313 |
tgcaagaacaatttttcaaacatttagtcttgcaatcatcaagtgtcattttctcatcaatccaagaatgcgtagtatcaggtaatttcattccggtaat |
412 |
Q |
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| T |
9565 |
tgcaagaacaatttttcaaacatttagtcttgcaatcatcaagtgtcattttctcatcaatccaagaatgcatagtatctggtaatttcattccagtaat |
9664 |
T |
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| Q |
413 |
tcttttaaaaccgtctctgtctttgatcccacaactccaattactattacgcacacatccttgtgtccagtccattg |
489 |
Q |
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| T |
9665 |
tttcttaaacccgtctctgtctttgatcccacaactccaattactattacgcacacatccttgtgtccagtccattg |
9741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 248 - 489
Target Start/End: Complemental strand, 28427143 - 28426902
Alignment:
| Q |
248 |
aagatcaccgaaccagatagaacaaccgctacctgctccacttgtgtctaaacttgagtaagcagtgcaagaacaatttttcaaacatttagtcttgcaa |
347 |
Q |
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| T |
28427143 |
aagatcaccaaaccagatggaacaaccactgactgctccatttgcatccaagtatgtataagctgtgcaagaacaattttgaaagcattttgtcttgcaa |
28427044 |
T |
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| Q |
348 |
tcatcaagtgtcattttctcatcaatccaagaatgcgtagtatcaggtaatttcattccggtaattcttttaaaaccgtctctgtctttgatcccacaac |
447 |
Q |
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| T |
28427043 |
tcgttaagtgtcgtgtttcgattaatccaagaatttgtagtatttggaaatttcatcccaacaaatttttgaaagccatcttggtttttgatcccacaac |
28426944 |
T |
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| Q |
448 |
tccaattactattacgcacacatccttgtgtccagtccattg |
489 |
Q |
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| T |
28426943 |
tccaatttccactacgcacacatccttgtgtccagtccattg |
28426902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 489
Target Start/End: Complemental strand, 28418553 - 28418370
Alignment:
| Q |
306 |
taagcagtgcaagaacaatttttcaaacatttagtcttgcaatcatcaagtgtcattttctcatcaatccaagaatgcgtagtatcaggtaatttcattc |
405 |
Q |
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||||| |||||||||||||||| ||| ||||| || |||||||| | ||||||||| || || ||||||||||| || ||||| ||||| ||||| | |
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| T |
28418553 |
taagctgtgcaagaacaattttgcaagcatttggttttgcaatcttgaagtgtcatgtttagattaatccaagaatttgttgtatcgggtaacttcatcc |
28418454 |
T |
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| Q |
406 |
cggtaattcttttaaaaccgtctctgtctttgatcccacaactccaattactattacgcacacatccttgtgtccagtccattg |
489 |
Q |
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| T |
28418453 |
taacaaatttctgaaacccatctcggtttttaatcccacagctccaatttccaccgcgcacacatccttgcgtccagtccattg |
28418370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 13854197 - 13854135
Alignment:
| Q |
426 |
tctctgtctttgatcccacaactccaattactattacgcacacatccttgtgtccagtccatt |
488 |
Q |
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| T |
13854197 |
tctctgtctttgaccccacaactccaattaccgttatgcacacatccttgcttccagtccatt |
13854135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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