View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16856_low_2 (Length: 436)
Name: NF16856_low_2
Description: NF16856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16856_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 29468296 - 29468661
Alignment:
| Q |
18 |
atgaaaaacaatgccaaaaagaggagaattgtgtgattctcttgccgaagacatgtaataaggacnnnnnnnnttacatactttgtgattcagctgtgca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29468296 |
atgaaaaacaatgccaaaaagaggagaattgtgtgattctcttgccgaagacatgtaataaggacaaaaaa--ttacatactttgtgattcagctgtgcg |
29468393 |
T |
|
| Q |
118 |
acaaataaggtagtgttttagttttggtcgaggttgatgctcaaaaactttataggttggacatgccggtaggtcttttgaaacctttcattgtaagctc |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29468394 |
agaaataaggtagtgttttagttttggtcgaggttgatgctcaaaaactttataggttggacatgccggtaggtcttttgaaacctttcattgtaagctc |
29468493 |
T |
|
| Q |
218 |
aacgaggcatgaagacaacattaaccttttcttgtttgacaatattttttgaacatattgaacatatttgtagagaaatttatgccacttgatgagggaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29468494 |
aacgaggcatgaagacaacattaaccttttcttgtttgacaatattttttgaacatattgaacatatttgtagagaaatttatgccacttgatgagggaa |
29468593 |
T |
|
| Q |
318 |
aataaatcttgaaatagttgatgcattcttagaaattcattaacttttagaaattgtcactggtttta |
385 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29468594 |
aataaatattgaaatagttgatgcattcttagaaattcattaacttttagaaattgtcaccggtttta |
29468661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 14999520 - 14999603
Alignment:
| Q |
103 |
tgattcagctgtgcaacaaataaggtagtgttttagttttggtcgaggttgatgctcaaaaactttataggttggacatgccggta |
188 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
14999520 |
tgattcagctgtgcaacaaataatgtagttttttagttttgaatgaggttgatgctc--aaactttttaggttggacatgctggta |
14999603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 14999445 - 14999501
Alignment:
| Q |
20 |
gaaaaacaatgccaaaaagaggagaattgtgtgattctcttgccgaagacatgtaat |
76 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||||||| |||| |||||||||||| |
|
|
| T |
14999445 |
gaaaaacaatgacaaaaagaggaaaattatgtgattctcatgccaaagacatgtaat |
14999501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University