View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16856_low_3 (Length: 418)

Name: NF16856_low_3
Description: NF16856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16856_low_3
NF16856_low_3
[»] chr6 (3 HSPs)
chr6 (18-404)||(32095025-32095411)
chr6 (90-136)||(15948724-15948770)
chr6 (69-175)||(35222242-35222348)
[»] chr4 (2 HSPs)
chr4 (18-393)||(48211391-48211766)
chr4 (18-393)||(46389690-46390065)
[»] scaffold0006 (1 HSPs)
scaffold0006 (18-393)||(204965-205341)
[»] chr1 (2 HSPs)
chr1 (18-388)||(23266163-23266532)
chr1 (59-152)||(21172071-21172164)
[»] chr7 (6 HSPs)
chr7 (69-393)||(21502955-21503279)
chr7 (39-136)||(22907973-22908070)
chr7 (98-139)||(12352798-12352839)
chr7 (90-145)||(3207159-3207214)
chr7 (76-109)||(34233031-34233064)
chr7 (279-343)||(4569518-4569582)
[»] scaffold0068 (2 HSPs)
scaffold0068 (18-172)||(11524-11678)
scaffold0068 (231-393)||(7158-7320)
[»] chr5 (3 HSPs)
chr5 (18-172)||(21702232-21702386)
chr5 (231-393)||(21706590-21706752)
chr5 (293-343)||(16983697-16983747)
[»] chr2 (1 HSPs)
chr2 (18-142)||(33347862-33347986)
[»] chr8 (1 HSPs)
chr8 (18-172)||(26383366-26383520)
[»] chr3 (2 HSPs)
chr3 (183-253)||(10982895-10982965)
chr3 (69-142)||(44493034-44493107)
[»] scaffold0530 (1 HSPs)
scaffold0530 (90-136)||(9733-9779)


Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 32095025 - 32095411
Alignment:
Q  18 gaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  32095025 gaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattttaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgt 32095124  T
Q  118 tcattatttgtgcagaagggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcatttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32095125 tcattatttgtgcagaagggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgctccaatcatttt 32095224  T
Q  218 gcatcttctcttcgcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32095225 gcatcttctcttcgcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtca 32095324  T
Q  318 ggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatagtgaatattctt 404  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32095325 ggtcaagcggtcaatctccaaaagtcggaatttttttgtagcaggaatgtttcaagggctgatcataataatatagcgaatattctt 32095411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 15948724 - 15948770
Alignment:
Q  90 caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg 136  Q
    |||||||||||| |||||||||||||||| ||| ||||||| |||||    
T  15948724 caaggtgaccctttgtcaccatatttgtttattctttgtgctgaagg 15948770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 35222348 - 35222242
Alignment:
Q  69 attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaagcta 168  Q
    ||||||||| ||||  | || ||||| || ||| |||| ||||| || ||||||||||||||||||||  | ||| | || |||||||| ||||||||||    
T  35222348 attccaggtcgaggactaagacaaggagatcctttgtcgccatacttattcattatttgtgcagaaggactttcctctttaattcggaaggcagaagcta 35222249  T
Q  169 gaggtga 175  Q
    | |||||    
T  35222248 gtggtga 35222242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 48211391 - 48211766
Alignment:
Q  18 gaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgt 117  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| ||  | ||||| || ||||    
T  48211391 gaaactgttgactattttgttcttgtcaatggtaatgtcacgggacctatcattcctggtagaggcttgaggcaaggtgatccattatcaccgtacttgt 48211490  T
Q  118 tcattatttgtgcagaagggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcatttt 217  Q
    | ||||| |||||||||||| |||| ||| | ||||||||||||||||| ||||| || || ||||| |  ||| |||| || |||| ||| || || |     
T  48211491 ttattatctgtgcagaagggctatcagcactcattcggaaagcagaagcaagaggggatattaatggtgtgaaagtctgtaataatgctcccataatatc 48211590  T
Q  218 gcatcttctcttcgcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtca 317  Q
     || || || || ||| ||||||||||  | ||||| ||||||| ||  ||  ||||||  |||||||||| |||| | ||  |||||||||||||||||    
T  48211591 acacctcctttttgcagatgattgcttcctgttttttcgtgctaatttgaacaaagcacaaaaaatgagaaatattctgtcagtttatgagaaagcgtca 48211690  T
Q  318 ggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatag 393  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||   ||||||||||| |||||||    
T  48211691 ggtcaagctgttaatctccaaaagtcagaatttttttgtagcaggaatgtttcaccagctgatcataaaaatatag 48211766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 46390065 - 46389690
Alignment:
Q  18 gaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgt 117  Q
    |||||||||||||||||| |||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| ||  | |||||  | ||||    
T  46390065 gaaactgtcgactattctattcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgaggcaaggtgatccattatcaccgcacttgt 46389966  T
Q  118 tcattatttgtgcagaagggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcatttt 217  Q
    | ||||| |||||||||||| ||||  || | |||| |||||||||||| ||||| || || ||||| |  ||  |||| || |||| ||| || || |     
T  46389965 ttattatatgtgcagaagggctatcaacactaattcagaaagcagaagcaagaggggatattaatggtgtgaaggtctgtaataatgctcccataatatc 46389866  T
Q  218 gcatcttctcttcgcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtca 317  Q
     || || || || ||| ||||  |||| || |||||  |||||| ||| || |||||||  |||||||||| |||||| ||  |||||||||||||||||    
T  46389865 acacctcctttttgcagatgaccgcttcttgtttttttgtgctaattcgaaccaagcacaaaaaatgagaaatattttgtcagtttatgagaaagcgtca 46389766  T
Q  318 ggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatag 393  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||||||||||  || |||||||||||||||||    
T  46389765 ggtcaagctgttaatctccaaaagtcataaattttttgtagcaggaatgtttcatcggttgatcataataatatag 46389690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 205341 - 204965
Alignment:
Q  18 gaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgt 117  Q
    ||||| || ||||||||| | || ||||||||||||||||| ||||| || ||||| |||||||| |||||||| || |||||  | ||||||||| | |    
T  205341 gaaaccgttgactattctatactagtcaatggtaatgttactggacctattattcctggtagaggcttgaggcagggagaccccttatcaccatatcttt 205242  T
Q  118 tcattatttgtgcagaagggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcatttt 217  Q
    | ||||||||||||||||| |||| |||  | ||||||||||| ||||| ||||| ||||| ||||| |  ||  | || || ||||  || || || |     
T  205241 ttattatttgtgcagaaggtttattcgcgcttattcggaaagctgaagcaagaggagaaatgaatggtgtgaaggtttgtaataatgcgcccattatatc 205142  T
Q  218 gcatcttctcttcgcatatgattgctttttatttttc-cgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtc 316  Q
     ||||| || || ||| | || || || ||||||||  | ||||||||||||||||||  |||||||||||| |||| |||| | |||||||||||||||    
T  205141 acatctactttttgcagacgactgtttcttatttttttcatgctacttcaaatcaagctttgaaaatgagaaatattctatcaacttatgagaaagcgtc 205042  T
Q  317 aggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatag 393  Q
    ||||||||||||||||||| ||||||| ||| | ||||||||||| ||||||||||  |||||||||||||||||||    
T  205041 aggtcaagcggttaatctcaaaaagtcagaagtcttttgtagcagaaatgtttcaacagctgatcataataatatag 204965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 23266532 - 23266163
Alignment:
Q  18 gaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgt 117  Q
    ||||| || ||||||| |||||||||||||||||||||||| || || || ||||| |  ||||| ||  |||||||||||||| ||||||| |||||||    
T  23266532 gaaaccgttgactattttgttcttgtcaatggtaatgttactggtcctattattcctgc-agaggcttacggcaaggtgaccctttgtcaccgtatttgt 23266434  T
Q  118 tcattatttgtgcagaagggttatccgcattgattcggaaagcagaagctagaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcatttt 217  Q
    | ||||||||||||||||||||||| ||  | ||||| |||||||||||||||||||| || ||||| |  ||||||||||||||||  || |||||||     
T  23266433 ttattatttgtgcagaagggttatctgctcttattcgaaaagcagaagctagaggtgatattaatggggttaaaatctgcaacaatgcgcctatcatttc 23266334  T
Q  218 gcatcttctcttcgcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtca 317  Q
     ||||| ||||| ||| |||| ||||| |||||||| ||||| |||   |  ||||   ||||||||||   ||||||||| |||||| |||| || |||    
T  23266333 acatctcctctttgcagatgactgcttcttattttttcgtgcaactcagaggcaagatttgaaaatgagggatattttatctatttataagaaggcatca 23266234  T
Q  318 ggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataa 388  Q
    ||||||||  | || || |||||||| ||||| ||||| ||| |||||||| |||  ||||||||||||||    
T  23266233 ggtcaagctatcaaccttcaaaagtctgaaatattttgcagccggaatgttccaactgctgatcataataa 23266163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 21172071 - 21172164
Alignment:
Q  59 gggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgatt 152  Q
    |||||| |||||||||||  | || || ||||||||||| ||  |||||||||| || |||||| ||||||| ||||| ||||| || ||||||    
T  21172071 gggacctatcattccaggacgtgggttaaggcaaggtgatccgttgtcaccatacttattcattctttgtgctgaaggtttatcggcgttgatt 21172164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 69 - 393
Target Start/End: Original strand, 21502955 - 21503279
Alignment:
Q  69 attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgcattgattcggaaagcagaagcta 168  Q
    ||||| |||||||| |||||||| || |||||| | ||||| ||| | || ||||||||||||||||| ||||||||  | |||||||||||| |||| |    
T  21502955 attcctggtagaggcttgaggcagggagaccctttatcaccgtatctttttattatttgtgcagaaggtttatccgcgcttattcggaaagcataagcaa 21503054  T
Q  169 gaggtgaaatcaatggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttatttttccgtgctacttcaaa 268  Q
    |||| ||||| ||||| |  ||  | || || | ||  || || || |  ||||| || || ||| |||| || || |||||||| | ||||||||||||    
T  21503055 gaggagaaattaatggtgtgaaggtttgtaatattgcgcccattatatcacatctactttttgcagatgactgtttcttattttttcatgctacttcaaa 21503154  T
Q  269 tcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtcggaaattttttgtagcaggaatgtt 368  Q
    ||||||  |||||||||||| |||| |||| | ||||||||||| ||||||||||||||||||||||||||||||  |||| ||||||||||| ||||||    
T  21503155 tcaagctttgaaaatgagaaatattctatcaacttatgagaaagtgtcaggtcaagcggttaatctccaaaagtcataaatcttttgtagcagaaatgtt 21503254  T
Q  369 tcaagggctgatcataataatatag 393  Q
    ||||   ||||||||||||||||||    
T  21503255 tcaacaactgatcataataatatag 21503279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 22907973 - 22908070
Alignment:
Q  39 cttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg 136  Q
    |||||||||||||||| |||  | || ||||||||||| |||||||| || ||||| ||||| || || ||||||||||| ||||||||||| |||||    
T  22907973 cttgtcaatggtaatgctacaagtccaatcattccaggaagaggtttaagacaaggagacccactatccccatatttgtttattatttgtgctgaagg 22908070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 12352839 - 12352798
Alignment:
Q  98 ccctctgtcaccatatttgttcattatttgtgcagaagggtt 139  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  12352839 ccctctgtcaccatatttgtacattatttgtgctgaagggtt 12352798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 3207214 - 3207159
Alignment:
Q  90 caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatccgc 145  Q
    ||||| |||||||| || ||||| ||||| ||||||||||||||||| ||||||||    
T  3207214 caaggggaccctctttctccatacttgtttattatttgtgcagaaggtttatccgc 3207159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 34233064 - 34233031
Alignment:
Q  76 gtagaggtttgaggcaaggtgaccctctgtcacc 109  Q
    |||| |||||||||||||||||||||||||||||    
T  34233064 gtaggggtttgaggcaaggtgaccctctgtcacc 34233031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 4569518 - 4569582
Alignment:
Q  279 aaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtc 343  Q
    ||||||| || |||||||||||||||||||| || |||| || |||  | |||||||||||||||    
T  4569518 aaaatgaaaaatattttatccatttatgagagagtgtcatgttaagacgctaatctccaaaagtc 4569582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 11678 - 11524
Alignment:
Q  18 gaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgt 117  Q
    |||||||| ||||||| |||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| ||  ||||||| || ||||    
T  11678 gaaactgttgactattatgttcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgaggcaaggtgatccattgtcaccgtacttgt 11579  T
Q  118 tcattatttgtgcagaagggttatccgcattgattcggaaagcagaagctagagg 172  Q
    | |||||||||||||||||| |||| ||| | ||||||||||||||||| |||||    
T  11578 ttattatttgtgcagaagggctatcagcactcattcggaaagcagaagcaagagg 11524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 393
Target Start/End: Complemental strand, 7320 - 7158
Alignment:
Q  231 gcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggtta 330  Q
    |||||||| ||||| || ||||| ||||||| ||| || |||||||  |||||||||| |||| | ||  ||||||||||||||||||||||||  ||||    
T  7320 gcatatgactgcttcttgttttttcgtgctaattcgaaccaagcacaaaaaatgagaaatattctgtcagtttatgagaaagcgtcaggtcaagatgtta 7221  T
Q  331 atctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatag 393  Q
    |||||||||||||  |||    |||||||| |||| |||||   |||||||||||||||||||    
T  7220 atctccaaaagtcaaaaaaaaattgtagcaagaatttttcaccagctgatcataataatatag 7158  T

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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 21702232 - 21702386
Alignment:
Q  18 gaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgt 117  Q
    |||||||| ||||||| |||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| ||  ||||||| || ||||    
T  21702232 gaaactgttgactattatgttcttgtcaatggtaacgtcacgggacctatcattcctggtagaggcttgaggcaaggtgatccattgtcaccgtacttgt 21702331  T
Q  118 tcattatttgtgcagaagggttatccgcattgattcggaaagcagaagctagagg 172  Q
    | |||||||||||||||||| |||| ||| | ||||||||||||||||| |||||    
T  21702332 ttattatttgtgcagaagggctatcagcactcattcggaaagcagaagcaagagg 21702386  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 393
Target Start/End: Original strand, 21706590 - 21706752
Alignment:
Q  231 gcatatgattgctttttatttttccgtgctacttcaaatcaagcactgaaaatgagaagtattttatccatttatgagaaagcgtcaggtcaagcggtta 330  Q
    |||||||| ||||| || ||||| ||||||| ||| || |||||||  |||||||||| |||| | ||  ||||||||||||||||||||||||  ||||    
T  21706590 gcatatgactgcttcttgttttttcgtgctaattcgaaccaagcacaaaaaatgagaaatattctgtcagtttatgagaaagcgtcaggtcaagatgtta 21706689  T
Q  331 atctccaaaagtcggaaattttttgtagcaggaatgtttcaagggctgatcataataatatag 393  Q
    |||||||||||||  |||    |||||||| |||| |||||   |||||||||||||||||||    
T  21706690 atctccaaaagtcaaaaaaaaattgtagcaagaatttttcaccagctgatcataataatatag 21706752  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 16983697 - 16983747
Alignment:
Q  293 tttatccatttatgagaaagcgtcaggtcaagcggttaatctccaaaagtc 343  Q
    |||||||| |||||||||||| ||||||||||||||||||||  |||||||    
T  16983697 tttatccacttatgagaaagcttcaggtcaagcggttaatcttaaaaagtc 16983747  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 33347862 - 33347986
Alignment:
Q  18 gaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgt 117  Q
    |||||||| || ||||||||||||||||| |||||| || | || || || || ||||||||||| ||||| |||||||||||||| ||||| ||| | |    
T  33347862 gaaactgttgattattctgttcttgtcaacggtaatattgctggtccgattataccaggtagagggttgagacaaggtgaccctctttcaccttatctct 33347961  T
Q  118 tcattatttgtgcagaagggttatc 142  Q
    | || || |||||||||||||||||    
T  33347962 ttatcatatgtgcagaagggttatc 33347986  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 26383520 - 26383366
Alignment:
Q  18 gaaactgtcgactattctgttcttgtcaatggtaatgttacgggacccatcattccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgt 117  Q
    |||||||| || ||||||||||||||||||| |||| || | || || || || ||||||||||| ||||| ||| |||||||||| ||||| ||| | |    
T  26383520 gaaactgttgattattctgttcttgtcaatgataatattgctggtccgattataccaggtagagggttgagacaatgtgaccctctttcaccttatctct 26383421  T
Q  118 tcattatttgtgcagaagggttatccgcattgattcggaaagcagaagctagagg 172  Q
    | || || |||||| || ||||||| ||  | ||| |||| ||||| ||||||||    
T  26383420 ttatcatatgtgcataaaggttatcagctctcattaggaaggcagaggctagagg 26383366  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 10982965 - 10982895
Alignment:
Q  183 ggagcaaaaatctgcaacaatgttccaatcattttgcatcttctcttcgcatatgattgctttttattttt 253  Q
    ||||| ||||||||||| |||| |||||| |||| |||||| ||||| ||| ||||||||||| |||||||    
T  10982965 ggagctaaaatctgcaataatgctccaattatttcgcatctgctctttgcagatgattgctttctattttt 10982895  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 44493034 - 44493107
Alignment:
Q  69 attccaggtagaggtttgaggcaaggtgaccctctgtcaccatatttgttcattatttgtgcagaagggttatc 142  Q
    ||||||||  ||||| |||| ||||| ||||| || || |||||||||||||||||||| || ||||| |||||    
T  44493034 attccagggcgaggtctgagacaaggggacccgctttccccatatttgttcattatttgcgcggaaggtttatc 44493107  T

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Target: scaffold0530 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 9733 - 9779
Alignment:
Q  90 caaggtgaccctctgtcaccatatttgttcattatttgtgcagaagg 136  Q
    |||||||||||| |||||||||||||||| ||| ||||||| |||||    
T  9733 caaggtgaccctttgtcaccatatttgtttattctttgtgctgaagg 9779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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