View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16856_low_4 (Length: 370)
Name: NF16856_low_4
Description: NF16856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16856_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 25624462 - 25624642
Alignment:
| Q |
17 |
gagccgtagtgcttttagcaaaagctacactaaggagttttaatagaatcatggtgtcatagttattttgctaaactcactgttacaatcgtgcatgttt |
116 |
Q |
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| T |
25624462 |
gagccgtagtgcttttagcaaaagctacactaaggagttttaatagaatcatggtgtcatagttatttcgctaaactcaccgttacaaacgtgcatgttt |
25624561 |
T |
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| Q |
117 |
ggtaaacattgacctaaacattcacttaattgttaactattttatggagaaaccgattattggaaatgtgaataattagtc |
197 |
Q |
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| T |
25624562 |
ggtaaacattgacctaaacattcacttaattgttaactattttatggagaaaccgattattggaaatgtgaatgattagtc |
25624642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 25624686 - 25624795
Alignment:
| Q |
241 |
agattgactaaccagatggggttggaagcagcagttgaggcagcagcagagtttcttaacaaagcagtgaaacctgtactagtaggtggtcctaaactga |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25624686 |
agattgactaaccagatggggttggaagcagcagttgaggcagcagcagagtttcttaacaaagcagtgaaacctgtactagtaggtggtcctaaactga |
25624785 |
T |
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| Q |
341 |
gggtggcgaa |
350 |
Q |
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| T |
25624786 |
gggtggcgaa |
25624795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 25605058 - 25605164
Alignment:
| Q |
241 |
agattgactaaccagatggggttggaagcagcagttgaggcagcagcagagtttcttaacaaagcagtgaaacctgtactagtaggtggtcctaaactga |
340 |
Q |
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| T |
25605058 |
agattgagtaaccacatggggttggaggcagcagttgaggcagcagcagagtttcttaacaaagcagtaaaacctgtactagtaggtggtcctaaactga |
25605157 |
T |
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| Q |
341 |
gggtggc |
347 |
Q |
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| T |
25605158 |
gggtggc |
25605164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 20435160 - 20435230
Alignment:
| Q |
268 |
gcagcagttgaggcagcagcagagtttcttaacaaagcagtgaaacctgtactagtaggtggtcctaaact |
338 |
Q |
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| T |
20435160 |
gcagcagtggaagcagctgcagagtttctcaacaaagcagtgaaaccggtactagtagccggtccaaaact |
20435230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 5331245 - 5331327
Alignment:
| Q |
256 |
atggggttggaagcagcagttgaggcagcagcagagtttcttaacaaagcagtgaaacctgtactagtaggtggtcctaaact |
338 |
Q |
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| T |
5331245 |
atgggattggaggcagcagtggaagcagctgcggaagttctcaacaaagcagtgaaaccagtactagtagccggtccaaaact |
5331327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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