View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16856_low_6 (Length: 240)
Name: NF16856_low_6
Description: NF16856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16856_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 55739335 - 55739510
Alignment:
| Q |
54 |
acatccctttaatttaatttaaaattttcaattcgttcgttatattttggttcctatatccgttctgaattggggatcccgtaattgtgcgtctgaattt |
153 |
Q |
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| T |
55739335 |
acatccctttaatttaatttaaaattttcaattcgttcgttatattttggttcctatatccgttctgaattggggatcccgtaattgtgtgtctgaattt |
55739434 |
T |
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| Q |
154 |
aagtggtccttttcctcacaagtgtgagttagagtgcccaaattgtataaaaaagcgagtgttaaacaatatatat |
229 |
Q |
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| T |
55739435 |
aagtggtccttttcctcacaagtgtgagttagagtgcccaaattgtataaaaaagcgagtgttaaacaatatatat |
55739510 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 19539016 - 19539044
Alignment:
| Q |
17 |
atataatgaacttgaagtttgttattcat |
45 |
Q |
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| T |
19539016 |
atataatgaacttgaagtttgttattcat |
19539044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 19549185 - 19549213
Alignment:
| Q |
17 |
atataatgaacttgaagtttgttattcat |
45 |
Q |
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| T |
19549185 |
atataatgaacttgaagtttgttattcat |
19549213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 19563431 - 19563459
Alignment:
| Q |
17 |
atataatgaacttgaagtttgttattcat |
45 |
Q |
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| T |
19563431 |
atataatgaacttgaagtttgttattcat |
19563459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 32151081 - 32151053
Alignment:
| Q |
17 |
atataatgaacttgaagtttgttattcat |
45 |
Q |
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| T |
32151081 |
atataatgaacttgaagtttgttattcat |
32151053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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