View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16856_low_8 (Length: 234)
Name: NF16856_low_8
Description: NF16856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16856_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 31859406 - 31859606
Alignment:
| Q |
22 |
tttctttcctttatgacgtcttccaaaatatgaatcatctttgctttgtaaagaggtttgttgacagttagtatatgtcctttcttgcgaagctccgtct |
121 |
Q |
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| T |
31859406 |
tttctttcctttatgacgtcttccaaaatatgaatcatctttgctttgtaaagaggtttgttgacagttagtatatgtcctttcttgcgaagctccgtct |
31859505 |
T |
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| Q |
122 |
ttacggtattggacgagtcatggttttgtaaccatacgaatttcgctctcgcgtagtatttgtgaaggaagttaagttgttctttccatatatctgtgct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31859506 |
ttacggtattggacgagtcatggttttgtaaccatacgaatttcgctcgcgcgtagtatttgtgaaggaagttaagttgttctttccatatatctgtgct |
31859605 |
T |
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| Q |
222 |
c |
222 |
Q |
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| T |
31859606 |
c |
31859606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 221
Target Start/End: Complemental strand, 8869888 - 8869708
Alignment:
| Q |
41 |
cttccaaaatatgaatcatctttgctttgtaaagaggtttgttgacagttagtatatgtcctttcttgcgaagctccgtctttacggtattggacgagtc |
140 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| || ||| || ||||||||| |||||||||||||||| |||||| || | ||| |
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| T |
8869888 |
cttccaaaatatgaatcatttttgctttgtaaagaggtttgttaaccattaataagtgtcctttccgacgaagctccgtctttatggtatttgatgtgtc |
8869789 |
T |
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| Q |
141 |
atggttttgtaaccatacgaatttcgctctcgcgtagtatttgtgaaggaagttaagttgttctttccatatatctgtgct |
221 |
Q |
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||| || | | ||| || ||||||||||| | | || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8869788 |
atgattcagcatccacacaaatttcgctcttccaaaatacttgtgaaggaagttaagttgttctttccatatatctgtgct |
8869708 |
T |
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