View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16856_low_9 (Length: 227)
Name: NF16856_low_9
Description: NF16856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16856_low_9 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 24478769 - 24478667
Alignment:
| Q |
6 |
actaatcaaagaatattagagtaaatcatgtttgttttaaagaaccgtnnnnnnnttatatgaaggtaggtcgactgagatagacagtaattatatatac |
105 |
Q |
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| T |
24478769 |
actaatcaaagaatattagagtaaatcatggttgttttaaagaaccgtaaaaaaattatatgaaggtaggtcgactgagatagacagtaattatatatac |
24478670 |
T |
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| Q |
106 |
aac |
108 |
Q |
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||| |
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| T |
24478669 |
aac |
24478667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 24422648 - 24422603
Alignment:
| Q |
61 |
ttatatgaaggtaggtcgactgagatagacagtaattatatataca |
106 |
Q |
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| T |
24422648 |
ttatatgaaggtaggtcgactgagatagacagtaattatatataca |
24422603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 24478627 - 24478539
Alignment:
| Q |
112 |
acaatacatataaccatttctcattaaataaaatattatatggtcgcccacaaatcctagctcaactgtttaaaatgccaaatttgttag |
201 |
Q |
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| T |
24478627 |
acaatacatataaccatttcacattaaataaagtaccatatggtcg-tcacaagtcctagctcaactgtttaaaatgtcgaaattgttag |
24478539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 24469143 - 24469183
Alignment:
| Q |
112 |
acaatacatataaccatttctcattaaataaaatattatat |
152 |
Q |
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| T |
24469143 |
acaatacatataaccatttctcattaaataaagtactatat |
24469183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 142
Target Start/End: Complemental strand, 24422561 - 24422531
Alignment:
| Q |
112 |
acaatacatataaccatttctcattaaataa |
142 |
Q |
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| T |
24422561 |
acaatacatataaccatttctcattaaataa |
24422531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 48391693 - 48391757
Alignment:
| Q |
163 |
aaatcctagctcaactgtttaaaatgccaaatttgttaggctggacatcataattggggttcgaa |
227 |
Q |
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|||||||| |||||||| | ||||| |||| |||||||||||||| |||| | ||||||||||| |
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| T |
48391693 |
aaatcctaactcaactggtaaaaatatcaaaattgttaggctggacgtcatgactggggttcgaa |
48391757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 3406 - 3446
Alignment:
| Q |
112 |
acaatacatataaccatttctcattaaataaaatattatat |
152 |
Q |
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| T |
3406 |
acaatacatataaccatttctcattaaataaagtactatat |
3446 |
T |
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