View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16857_low_2 (Length: 334)
Name: NF16857_low_2
Description: NF16857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16857_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 334
Target Start/End: Original strand, 34883141 - 34883471
Alignment:
| Q |
6 |
aataacatgcgtcgaggagcattcttaaatgtcttgtttaatagagaacatgaagaggaaccaacaacattaacagtacgaggatgtggtgtactggcac |
105 |
Q |
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| T |
34883141 |
aataacatgcgtcgaggagcattcttaaatgtcttgtttaatagagaacatgaagaggaaccaacaacattaacagtacgaggatgtggtgtactcgcac |
34883240 |
T |
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| Q |
106 |
aataacaggacataactggtaaccttagtccaacaaaattggtcatcttcactcagcaagac---nnnnnnnnnnnnnnnnnnctactgttaccttgttt |
202 |
Q |
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| T |
34883241 |
aataacaggacataactggtaaccttagtccaacaaaattggtcatcttcactcagcaagacatgatgatgatgatgatgatactactgttaccttgttt |
34883340 |
T |
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| Q |
203 |
tactacctacaaaatctagtctagtctatctaggaacatagtaatacttgtcaccgttggattttacttagacaaggatcattcatgactgagtttgtga |
302 |
Q |
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| T |
34883341 |
tgctacctacaaaatctagtctagtctatctaggaacatagtaatac-tgtcaccgttggattttccttagacaaggatcattcatgagtgagtttgtga |
34883439 |
T |
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| Q |
303 |
tttacatgcatattacgtggcttattatcctc |
334 |
Q |
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| T |
34883440 |
tttacatgcatattacgtggcttcttatcctc |
34883471 |
T |
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