View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16857_low_3 (Length: 311)
Name: NF16857_low_3
Description: NF16857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16857_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 31837034 - 31837326
Alignment:
| Q |
8 |
acatcatcatcaatgaaaaattgaggactatgagctgaatatatggatccactcttttcattttttatacctaaaaagaaaaatgagccaggcacttttt |
107 |
Q |
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| T |
31837034 |
acatcttcatcaatgaaaaattgaggactatgagctgaatatatggatccactcttttcattttttatacctaaaaagaaaaatgagccaggcacttttt |
31837133 |
T |
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| Q |
108 |
ccaagtaaaatgcaaaatcttcactccctgtgacgattggtgataattttatgttctcttctccaacaatcatactagatactttcctcgctagttggta |
207 |
Q |
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| T |
31837134 |
ccaagtaaaatgcaaaatcttcactccctgtgacgatgggtgataattttatgttctcttctccaacaatcatactagatactttcctcgctagttggta |
31837233 |
T |
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| Q |
208 |
gattctctcatcatttgtagtaggaggaattgttggatgttcctcgccaaagaattcaacctctgctgagcatctatacacttctgcttgccct |
301 |
Q |
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| T |
31837234 |
gattctctcatcatttgtagtaggaggaattgttggatgttcctcgccaaagaa-tcaacctctgctgagcatctatacacttctgcttgccct |
31837326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 26266038 - 26265745
Alignment:
| Q |
8 |
acatcatcatcaatgaaaaattgaggactatgagctgaatatatggatccactcttttcattttttatacctaaaaagaaaaatgagccaggcacttttt |
107 |
Q |
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||||| |||||||| ||| | |||||||||||||||||||||||||||||| ||| ||||||| ||||||||| | |||||||||||| || ||||||| |
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| T |
26266038 |
acatcttcatcaataaaatagtgaggactatgagctgaatatatggatccaaccttctcattttgtatacctaagaggaaaaatgagccgggaacttttt |
26265939 |
T |
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| Q |
108 |
ccaagtaaaatgcaaaatcttcactccctgtgacgattggtgataattttatgttctcttctccaacaatcatactagatactttcctcgctagttggta |
207 |
Q |
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| T |
26265938 |
ccaagtaaaatgcaaaatcttcacttgctgtgtaggttggtgctaattttatgttctcttctccaacaatcatacttgatgcttgtcttccaagttggtg |
26265839 |
T |
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| Q |
208 |
gattctctcatcatttgtagtaggaggaattgttggatgttcctcgccaaagaattcaacctctgctgagcatctatacacttctgcttgccct |
301 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||| | |||||||| ||||||||||| | ||| |||| |||| |||||||||| |
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| T |
26265838 |
tattctctcatcatttgtagttggagggattgttggatgttctttaccaaagaactcaacctctgcagtgcacctatgtacttttgcttgccct |
26265745 |
T |
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