View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16857_low_4 (Length: 213)
Name: NF16857_low_4
Description: NF16857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16857_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 40235639 - 40235579
Alignment:
| Q |
12 |
atcatcaatgtgtaaaaagatgaaggtaatggatggggaggaaaataataatatgttggag |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40235639 |
atcatcaatgtgtaaaaagatgaaggtaatggatggggaggaaaataataatatgttggag |
40235579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 17460990 - 17461042
Alignment:
| Q |
12 |
atcatcaatgtgtaaaaagatgaaggtaatggatggggaggaaaataataata |
64 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | ||||||||||| ||||| |
|
|
| T |
17460990 |
atcatcaatgtgtcaaaagatgaaggtaatggacgaggaggaaaatactaata |
17461042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University