View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16858_low_1 (Length: 681)

Name: NF16858_low_1
Description: NF16858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16858_low_1
NF16858_low_1
[»] chr3 (1 HSPs)
chr3 (1-674)||(42062752-42063425)
[»] chr1 (1 HSPs)
chr1 (1-171)||(9514335-9514505)


Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Complemental strand, 42063425 - 42062752
Alignment:
Q  1 ggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtccatgagaataaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42063425 ggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtccatgagaataaaaaat 42063326  T
Q  101 gggtcacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaattcctctgcttacattgctcttgtggtgac 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42063325 gggttacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaattcctctgcttacattgctcttgtggtgac 42063226  T
Q  201 tggtaccggtaaagcggatgcagttcactctgcactacgcggatctgaaacatctgaaaagcttcctgctgcattggtttcacctgaaggggagttgaaa 300  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42063225 tggtaccggcaaagcggatgcagttcactctgcactacgcggatctgaaacatctgaaaagcttcctgctgcattggtttcacctgaaggggagttgaaa 42063126  T
Q  301 tggttcttggacaaaggtgcagcgtcaaagctgtagatcctaaagctaagccagctaatctatgtgttgtgctcgtgtttattttggcaataatgagttt 400  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42063125 tggttcttggacaaaggtgctgcgtcaaagctgtagatcctgaagctaagccagttaatctatgtgttgtgctcgtgtttattttggcaataatgagttt 42063026  T
Q  401 gtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgcagcaataagaggataaagtgaagaaag 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42063025 gtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgtagcaataagaggataaagtgaagaaag 42062926  T
Q  501 agtgcaatgcgaagttcttttggttcaaagtctaaaatttcccttgataggtttcccattaatgtgaagtaactcaccctccccctcatccttcgtattc 600  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||    
T  42062925 agtgcaaggcaaagttcttttggttcaaagtctaaaatttcccttgataggtttcccattattgtgaagcaactcaccctccccctcatctttcgtattc 42062826  T
Q  601 atttcagttgggatgcttccagcggaaggctgagttacgttcattacttagctgatcagattggtatgatgatg 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42062825 atttcagttgggatgcttccagcggaaggctgagttacgttcattacttagctgatcagattggtatgatgatg 42062752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 9514505 - 9514335
Alignment:
Q  1 ggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtccatgagaataaaaaat 100  Q
    ||||| |||||||||||||||||| | || || |||||||| ||||| ||||| || ||| | |||||||||||  ||||| |||| ||| || | ||||    
T  9514505 ggattaccaaaatttgatctcatgctcctaggtatgggtccggatggacatgttgcatctttattcccaggtcatgctcttctccaagaggatcagaaat 9514406  T
Q  101 gggtcacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaat 171  Q
    |||| || |   | |  ||||| |||||||||||  |||||||||| || || || ||||| |||||||||    
T  9514405 gggttactttcctcactgactcaccaaaaccaccatcagagagaattactttcacttttccagtgatcaat 9514335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University