View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16858_low_4 (Length: 369)
Name: NF16858_low_4
Description: NF16858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16858_low_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 13219403 - 13219764
Alignment:
| Q |
1 |
tttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219403 |
tttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactcttt |
13219502 |
T |
|
| Q |
101 |
gcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13219503 |
gcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggatttattatgacaggggcttttgct |
13219602 |
T |
|
| Q |
201 |
catggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatt |
300 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13219603 |
catggagcgatattttttattcgggattacaatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatt |
13219702 |
T |
|
| Q |
301 |
taagttgggccagcctatttctggggttccatactttgggactttatgtccatgatgatgtc |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13219703 |
taagttgggccagcctatttctggggttccatactttgggactttatgtccataatgatgtc |
13219764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 47842098 - 47842150
Alignment:
| Q |
123 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcagg |
175 |
Q |
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| T |
47842098 |
caagactttactactcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 47842174 - 47842226
Alignment:
| Q |
118 |
tagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
170 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47842174 |
tagcacaggattttactactcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
191 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
251 |
Q |
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| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 10996334 - 10996673
Alignment:
| Q |
19 |
attcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttgcctgcttatgcgtttat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
10996334 |
attcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactctttacctacttatgcgtttat |
10996433 |
T |
|
| Q |
119 |
agcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatggagcgatatttttt |
218 |
Q |
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||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||| ||||| ||||| |
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| T |
10996434 |
agcgcaagactttacagctcaagctgcggtatatactcatcatcaattcattgcaggatttattatgacatgagcttttgctcatggaacgata-ttttt |
10996532 |
T |
|
| Q |
219 |
attcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagttgggccagcctat |
318 |
Q |
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||| | ||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
10996533 |
atttgagattacaatcccgaacataatgagaataatgtattggca--gatgttagagcacaaagaagctatcatatcccatttaagttgagccatcctat |
10996630 |
T |
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| Q |
319 |
ttctggggttccatactttgggactttatgtccatgatgatgt |
361 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
10996631 |
ttctagggttccatactttgggactttatgtccataatgatgt |
10996673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 3065837 - 3065875
Alignment:
| Q |
134 |
tactcaagctgcgttatatactcatcatcaatacattgc |
172 |
Q |
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| T |
3065837 |
tactcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 238306 - 237958
Alignment:
| Q |
1 |
tttatgacacaatcaataattcaattcattttcaattaggccttgctctagcctcattaggggtcattacttctttggtagctcaacacatgtactcttt |
100 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||| || ||||||||||| ||||||||||| |
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| T |
238306 |
tttatgacacaatcaacaattcgattcattttcagttaggtcttgctctagcttctttaggggttattacttccttagtagctcaacatatgtactcttt |
238207 |
T |
|
| Q |
101 |
gcctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgct |
200 |
Q |
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||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || || || |||||||||||||||||| |
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| T |
238206 |
acctccttatgcattcatagcacaagactttactactcaagctgctttatatactcatcaccaatatattgcggggttcatcatgacaggggcttttgct |
238107 |
T |
|
| Q |
201 |
catggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatt |
300 |
Q |
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|||||||| || ||||| ||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| |
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| T |
238106 |
catggagctatttttttcattagggattacaatccggaacagaatgaggataatgtattggcaagaatgttagaccataaagaagctatcatatctcatt |
238007 |
T |
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| Q |
301 |
taagttgggccagcctatttctggggttccatactttgggactttatgt |
349 |
Q |
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|||||||||| ||||| ||||| || |||||||| ||||| |||||||| |
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| T |
238006 |
taagttgggctagcctctttctaggattccataccttgggcctttatgt |
237958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 18013484 - 18013446
Alignment:
| Q |
134 |
tactcaagctgcgttatatactcatcatcaatacattgc |
172 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |
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| T |
18013484 |
tactcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 32566683 - 32566650
Alignment:
| Q |
61 |
gggtcattacttctttggtagctcaacacatgta |
94 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
32566683 |
gggtcattacttctttggtagctcaatacatgta |
32566650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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