View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16858_low_5 (Length: 230)
Name: NF16858_low_5
Description: NF16858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16858_low_5 |
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| [»] scaffold1425 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 44492159 - 44492096
Alignment:
| Q |
84 |
tatggatcaaagtgagaatggggttgaatttgtatgatgaatgcatgaagatgataattttgag |
147 |
Q |
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| T |
44492159 |
tatggatcaaagtgagaatggggttgaatttgtatgatgaatgcatgaagatgataattttgag |
44492096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 44493136 - 44493073
Alignment:
| Q |
11 |
catcatccccttcattatcttcatcctcaaacccataaattcatcatcttcatcacaaaatcca |
74 |
Q |
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| T |
44493136 |
catcatccccttcattatcttcatcctcaaacccataaattcatcatcttcatcacaaaatcca |
44493073 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 36682290 - 36682237
Alignment:
| Q |
19 |
ccttcattatcttcatcctcaaacccataaattcatcatcttcatcacaaaatc |
72 |
Q |
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| T |
36682290 |
ccttcatcatcttcatcctcaagcccataaattcatcatcaacatcacaaaatc |
36682237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36681250 - 36681295
Alignment:
| Q |
19 |
ccttcattatcttcatcctcaaacccat-aaattcatcatcttcat |
63 |
Q |
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| T |
36681250 |
ccttcatcatcttcatcctcaagcccataaaattcatcatcttcat |
36681295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 7225215 - 7225151
Alignment:
| Q |
11 |
catcatccccttcattatcttcatcctcaaacccataaattcatcatcttcatcacaaaatccag |
75 |
Q |
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| T |
7225215 |
catcatacccttcaccaccttcatcctcaaacccagaaaatcatcatcttcatcactaaatccag |
7225151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1425 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1425
Description:
Target: scaffold1425; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 1398 - 1365
Alignment:
| Q |
31 |
tcatcctcaaacccataaattcatcatcttcatc |
64 |
Q |
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| T |
1398 |
tcatcctcaaacccagaaattcatcatcttcatc |
1365 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 13325431 - 13325382
Alignment:
| Q |
16 |
tccccttcattatcttcatcctcaaaccca-taaattcatcatcttcatc |
64 |
Q |
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| T |
13325431 |
tccccttcattatcttcatcatcaaaccaagaaaattcatcatcttcatc |
13325382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 48571756 - 48571712
Alignment:
| Q |
30 |
ttcatcctcaaacccataaattcatcatcttcatcacaaaatcca |
74 |
Q |
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| T |
48571756 |
ttcatcctcaaacctaaaaattcatcatcttcataaccaaatcca |
48571712 |
T |
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