View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16859_high_1 (Length: 577)
Name: NF16859_high_1
Description: NF16859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16859_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 562
Target Start/End: Original strand, 3442076 - 3442621
Alignment:
| Q |
18 |
acctcacaaaccaatcataaatgttcaatgacttggtcctttaatcaatgaaaaatgagtatgtagtaaactatcaaagaaatagatcccaactcacaaa |
117 |
Q |
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| T |
3442076 |
acctcacaaaccaatcataaatgttcaatgacttagtcctttaatcaatgaaaaatgagtatgtagtaaactatcaaagaaatagatcccaactcacaaa |
3442175 |
T |
|
| Q |
118 |
gaaatgggaattggtcggtagttattcaacactcaattgtacttaaatgtgnnnnnnnnnnnggg-acctatagaactcaaaagtttagaaatagttgtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
3442176 |
gaaatgggaattggtcggtagttattcaacactcaattgtacttaaatgtgtttttttttttggggacctatagaactcaaaagtttagaaatagttgtt |
3442275 |
T |
|
| Q |
217 |
tatagtcacaagggtaatgaaacaagggccaatatagttttcatttttctatggttgtgttgtagttccttttgggaacatgggatgtattttaacgacc |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3442276 |
tatagtcacaagggtaatgaagcaagggccaatatagttttcatttttctatcgttgtgttgtagttccttttgggaacatgggatgtattttaacgacc |
3442375 |
T |
|
| Q |
317 |
tatcttagtccttgtgtgcatatagtaataatacattatataatgcaacatgcatgtgatatgtttttcttaattataattatgattattttgacaatgt |
416 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3442376 |
tatcttagtccttgtgtgcatatagtaataacacattatataatgcaacatgcatgtgatatgtttttcttaattataattatgattattttgacaatgt |
3442475 |
T |
|
| Q |
417 |
tggttggtttaaccgattcatatctcacaaaagagttcaacttctactaacgacgtgagaatctcatcagtcgataatcttcaagatacaactcgcataa |
516 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
3442476 |
tggttggtttaaccgattcatatctcacaagagagttcgactcctactaacgacgtgagaatctcatcggtcgataatcttcaagatacaactcacataa |
3442575 |
T |
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| Q |
517 |
attaaaaaataatattaggattatttttggtccattagaatataat |
562 |
Q |
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| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3442576 |
accgaaaaataatattaggattatttttggtccattaaaatataat |
3442621 |
T |
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