View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16859_high_4 (Length: 284)
Name: NF16859_high_4
Description: NF16859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16859_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 265
Target Start/End: Original strand, 34809520 - 34809762
Alignment:
| Q |
23 |
agcgaaaccgtgtcgacgacgaaaccgaaacaaaaaagaaactagcaaccgctacacaaaacggcaccgtcttcaacccagccacctcactcgccaacgc |
122 |
Q |
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| T |
34809520 |
agcgtaaccgtgtggacgacgaaaccgaaacaaaaaagaaactagcaaccgctacacaaaacggcaccgtcttcaacccagccacctcactcgccaacgc |
34809619 |
T |
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| Q |
123 |
acgacacgaattcggcgaacacggcggcgtaaacatgtcaatagaagcctcggtaacattcacagtcatggaaccagaaactctccgacgcatgttcgcc |
222 |
Q |
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| T |
34809620 |
acgacacgaattcggcgaacacggcggcgtaaacatgtcaatagaagcctcggtaacattcacagtcatggaaccagaaactctccgacgcatgttcgcc |
34809719 |
T |
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| Q |
223 |
ggagagttaggtccagaccgcgacttcttcgtctacagccgtc |
265 |
Q |
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| T |
34809720 |
ggagagttaggtccagaccgcgacttcttcgtctacagccgtc |
34809762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 36595642 - 36595543
Alignment:
| Q |
110 |
cactcgccaacgcacgacacgaattcggcgaacacggcggcgtaaacatgtcaatagaagcctcggtaacattcacagtcatggaaccagaaactctccg |
209 |
Q |
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|||||||||| || || || ||||| |||||||| ||||| || |||||||| || || ||||| | || ||||| |||||||||||||| |||||||| |
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| T |
36595642 |
cactcgccaatgcccgccatgaatttggcgaacatggcggggttaacatgtcgattgaggcctctgccacgttcaccgtcatggaaccagatactctccg |
36595543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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