View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16859_low_4 (Length: 285)
Name: NF16859_low_4
Description: NF16859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16859_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 25695828 - 25695549
Alignment:
| Q |
1 |
gcaatgacacaaggtaagagataagtaggggtacgaggagtgtgtttagaagaatgtgccattgtagaagaagaaaaatcagaaacaatgaagaaagtgt |
100 |
Q |
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| T |
25695828 |
gcaatgacacaaggtaagagataagtaggggtacgaggagtgtgtttagaagaatgtgccattgtagaagaagaaaaatcagaaacaatgaagaaagtgt |
25695729 |
T |
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| Q |
101 |
cttttgagtttggtaacacattttgttatgttactaaatgttgttgtaaaagattgagaagaagtggtggtagagtcatgatttagaaacataaggacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25695728 |
cttttgagtttggtaacacattttgttatgttactaaatgttgttgtaaaagattgagaagaagtggtggtagagtcatgatttagaaacataaggacac |
25695629 |
T |
|
| Q |
201 |
tcatttcacatgatggtggagaccacgtgtgtgaaaaatgctgtg-aaagttgagattgaggttattattatgatgatgt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
25695628 |
tcatttcacatgatggtggagaccacgtgtgtgaaaaatgctgtgaaaagttgagattgaggttattatgatgatgatgt |
25695549 |
T |
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