View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1685_high_2 (Length: 469)
Name: NF1685_high_2
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1685_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 265 - 451
Target Start/End: Original strand, 45181700 - 45181886
Alignment:
| Q |
265 |
gtaaaagtaggtaaattaagtaagcatacgttgatagaggtaattactgattataatttgtaggttccatctgaaaatcttaaaaggcaaaacataattg |
364 |
Q |
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| T |
45181700 |
gtaaaagtaggtaaatcaagtaagcatacgttgatagaggtaattactgattataatttgtacgttccatctgaaaatcttaaaaggcaaaacataattg |
45181799 |
T |
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| Q |
365 |
tttaatgaaacagatcaacatggttgtgtattactattagagtactacttacagtccagtatatagtagatgcagtgtcgctaaatg |
451 |
Q |
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| T |
45181800 |
tttaatgaaacagatcaacatggttgtgtattactattagagtactacttacagtccagtatatagtagatgcagtgtcgctaaatg |
45181886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 45181469 - 45181702
Alignment:
| Q |
1 |
gcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatcaattccaggggtataccgcataagacaaggattataaattacatgc---- |
96 |
Q |
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| T |
45181469 |
gcctcccagtaagcacttctgcaaa-tatgcatccaatgctccaaatatcaattccaggggtataccgcataagacaaggattataaattacatgcatat |
45181567 |
T |
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| Q |
97 |
-------atatttcaatacatcaagtgtagtcaccttgatcttgtatcacacgtacacgtacacatacacaacccaagaaaatatgatgtcaaacaaaaa |
189 |
Q |
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| T |
45181568 |
ataatatatatttcaatacatcaagtgtagtcaccttgatcttgtatcac----------acacatacacaacccaagaaaatatgatgtcaaacaaaaa |
45181657 |
T |
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| Q |
190 |
acttacttttgtgaaaaaagaaccacatagttcaggtgcacggta |
234 |
Q |
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| T |
45181658 |
acttacttttgtgaaaaaagaaccacatagttcaggtgcacggta |
45181702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 187 - 374
Target Start/End: Original strand, 45174745 - 45174927
Alignment:
| Q |
187 |
aaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggtaccacctagttgcaatataatatagtcctttgtaaaagtaggtaaattaagta |
286 |
Q |
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| T |
45174745 |
aaaacttacttttgagaaaaaagaaccacatagttcaggtgcacggtaccacctagttgc-----aacatagtccttggtaaaagtaggtaaattaagtc |
45174839 |
T |
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| Q |
287 |
agcatac-gttgatagaggtaattactgattataatttgtaggttccatctgaaaatctt-aaaaggcaaaacataattgtttaatgaaa |
374 |
Q |
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| T |
45174840 |
agcaagcggtttagagaggtagcta--gattgcaatttgtaggttccaactgaaaatcttaaaaaggaaaaacataattgattgatgaaa |
45174927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 45174577 - 45174690
Alignment:
| Q |
1 |
gcctcccagtaagcacttctgcaaaatatgcatccaatgttccaaatatcaattccaggggtataccgcataagacaaggattataaattacatgcatat |
100 |
Q |
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| T |
45174577 |
gcctcccagtaagcatttctgcaaa-tatgcatccaatgctccaaatatcaattccaggtgtatactgcataagaaagggaatataaattacatacatat |
45174675 |
T |
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| Q |
101 |
ttcaatacatcaagt |
115 |
Q |
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| T |
45174676 |
ttcaatacatcaagt |
45174690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 29961554 - 29961651
Alignment:
| Q |
10 |
taagcacttctgcaaaatatgcatccaatgttccaaatatcaattccaggggtataccgcataagacaaggattataaattacatgcatatttcaatac |
108 |
Q |
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| T |
29961554 |
taagcatttctgcaaa-tatgcatccaatgctccaaatatcaatcgctggagtatactgcaaaagacaagaatttgaaattacatacatatttcaatac |
29961651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 29961966 - 29962023
Alignment:
| Q |
191 |
cttacttttgtgaaaaaagaaccacatagttcaggtgcacggtaccacctagttgcaa |
248 |
Q |
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| T |
29961966 |
cttacttttgagaaaaaagaaccacatagttcaggtgcacgataccaccgagtcgcaa |
29962023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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