View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1685_low_1 (Length: 587)
Name: NF1685_low_1
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1685_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Original strand, 39955854 - 39956408
Alignment:
| Q |
17 |
agatgccaggggaaacaagttaagcaattctggttcattgaagccacttgctttagacctcggcgatggatgcaaataaaatcgtctctctttgatagct |
116 |
Q |
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| T |
39955854 |
agatgccaggggaaacaagttaagcaattctggttcattgaagccacttgctttagacctcggtgatggatgcaaataaaatcgtctctctttgatagct |
39955953 |
T |
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| Q |
117 |
ttctcttcttcttctatgtttatttcatttatcacagatccttgtttcttttcatcttccataatagttaaccgagagaacaatgttgaaggtgtggtag |
216 |
Q |
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| T |
39955954 |
ttctcttcttcttctatgtttatttcatttatcacagatccttgtttcttttcatcttccataatagttaaccgagagaacaatgttgaaggtgtggtag |
39956053 |
T |
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| Q |
217 |
ggcttggaagaagactagaacttccactacctgatacaggacttgaaggaaagctagaatttcttgacttagaagaaggtgatgcacctggttgtttgtg |
316 |
Q |
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| T |
39956054 |
ggcttggaagaagactagaacttccactacctgatacaggacttgaaggaaagctagaatttcttgacttagaggaaggtgatgcacctggttgtttgtg |
39956153 |
T |
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| Q |
317 |
atattgtaaatttggattaacaatctcaagttttggcttcatgcatttccttctttcatggagttttggtggtgttctctttgcaatcggtgcaaccttt |
416 |
Q |
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| T |
39956154 |
atattgtaaatttggtttaacaatctcaagttttggcttcatgcatttccttctttcatggagttttggtggtgttctctttgtaatcggtgcaaccttt |
39956253 |
T |
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| Q |
417 |
gcagtttgctcttcctttgttgcattgccttctgagggacctgttaatctttgcactacttccctaaatgcacctgtgtttgtgtgaacaaacgttgtta |
516 |
Q |
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| T |
39956254 |
gcagtttgctcttcctttgttgcattgccttctgagggacctgttaatctttgcactacttccctaaatgcacctgtgtttgtgtgaacaaacgttgtta |
39956353 |
T |
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| Q |
517 |
gtggtttacaatcacctgttgttgaaccatgtactggtggcttctccattcccat |
571 |
Q |
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| T |
39956354 |
gtggtttacaatcacctgttgttgaaccatgtactggtggcttctccattcccat |
39956408 |
T |
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