View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1685_low_10 (Length: 240)
Name: NF1685_low_10
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1685_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 32704293 - 32704072
Alignment:
| Q |
9 |
gagatgaagccataacaaacatgtacaacaaaacactccccgtaagcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtgat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32704293 |
gagaagaagccataacaaacatgtacaataaaacactccccataagcttggcaattgcagatttgggttgctcttatggaccaaacactttgttggcgat |
32704194 |
T |
|
| Q |
109 |
ctcaga---tatcaaggttttggaaaagatttgtcgagagcttaatcataaatctcctga----atataaggtctttttgaacgatctactagggaacga |
201 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32704193 |
ctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaatatatataaggtctttttgaacgatctaccagggaacga |
32704094 |
T |
|
| Q |
202 |
cttcaacaatgtatttaggtcc |
223 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32704093 |
cttcaacaatgtatttaggtcc |
32704072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 32628065 - 32627862
Alignment:
| Q |
9 |
gagatgaagccataacaaacatgtacaacaaaacactccccgtaagcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtgat |
108 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||| || ||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
32628065 |
gagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgat |
32627966 |
T |
|
| Q |
109 |
ctcaga---tatcaaggttttggaaaagatttgtcgagagcttaatcataaatctcctgaatataaggtctttttgaacgatctactagggaacgacttc |
205 |
Q |
| |
|
|| ||| |||||| ||| |||||||| |||||||| | ||||||||||||||||| ||||||| | | | |||||||||||||| || || |||||| |
|
|
| T |
32627965 |
cttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaatatatgatatatttgaacgatctaccgggaaatgacttc |
32627866 |
T |
|
| Q |
206 |
aaca |
209 |
Q |
| |
|
|||| |
|
|
| T |
32627865 |
aaca |
32627862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 32709959 - 32709822
Alignment:
| Q |
53 |
agcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtgatctcaga---tatcaaggttttggaaaagatttgtcgagagctta |
149 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||| ||||||||| |||||||| ||||||||||| | | |
|
|
| T |
32709959 |
agcttagcaattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttga |
32709860 |
T |
|
| Q |
150 |
atcataaatctcctgaatataaggtctttttgaacgat |
187 |
Q |
| |
|
||||| ||||||| ||||| |||||||| ||||||||| |
|
|
| T |
32709859 |
atcatgaatctcccgaatacaaggtcttcttgaacgat |
32709822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 7298224 - 7298116
Alignment:
| Q |
9 |
gagatgaagccataacaaacatgtacaacaaaacactccccgtaagcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtgat |
108 |
Q |
| |
|
|||||||||||||||||| | | ||| ||||||||| | |||| | ||||||||||| || ||||| |||| |||||||||||||||||| ||| | |
|
|
| T |
7298224 |
gagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttgtggt |
7298125 |
T |
|
| Q |
109 |
ctcagatat |
117 |
Q |
| |
|
|||||||| |
|
|
| T |
7298124 |
atcagatat |
7298116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 5811667 - 5811525
Alignment:
| Q |
52 |
aagcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtgatctcaga---tatcaaggttttggaaaagatttgtcgagagctt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||| | |||||| |||||||||| ||| |
|
|
| T |
5811667 |
aagcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaactt |
5811568 |
T |
|
| Q |
149 |
aatcataaatctcctgaatataaggtctttttgaacgatctac |
191 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
5811567 |
aatcataaatctcccgaatataaagtctttttgaacgatctac |
5811525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 21943859 - 21943696
Alignment:
| Q |
63 |
ttgcagacttgggttgctcttatggaccaaacactttgttggtgatctcaga---tatcaaggttttggaaaagatttgtcgagagcttaatcataaatc |
159 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||| ||||||||||||||||| || ||| || ||| |||||||| |||||| |||| | |||||| |||| |
|
|
| T |
21943859 |
ttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatc |
21943760 |
T |
|
| Q |
160 |
tcctgaatataaggtctttttgaacgatctactagggaacgacttcaacaatgtatttaggtcc |
223 |
Q |
| |
|
||| ||||||||||| |||||||||||||||| || ||||| |||||||| |||||||||||| |
|
|
| T |
21943759 |
tcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcc |
21943696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 20115800 - 20115948
Alignment:
| Q |
63 |
ttgcagacttgggttgctcttatggaccaaacactttgttggtgatctcaga---tatcaaggttttggaaaagatttgtcgagagcttaatcataaatc |
159 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||| ||||| ||| | |||||| |||| |
|
|
| T |
20115800 |
ttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatc |
20115899 |
T |
|
| Q |
160 |
tcctgaatataaggtctttttgaacgatctactagggaacgacttcaac |
208 |
Q |
| |
|
|||||||||| | |||| ||||||||||||| || |||||||||||| |
|
|
| T |
20115900 |
tcctgaatatgatgtctctttgaacgatctatccggaaacgacttcaac |
20115948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 27736986 - 27736819
Alignment:
| Q |
52 |
aagcttggcaattgcagacttgggttgctcttatggaccaaacactttgttggtgatctcaga---tatcaaggttttggaaaagatttgtcgagagctt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||| |||||| | | ||||||| |||||| || || | |
|
|
| T |
27736986 |
aagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcat |
27736887 |
T |
|
| Q |
149 |
aatcataaatctcctgaatataaggtctttttgaacgatctactagggaacgacttcaacaatgtatt |
216 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| ||||||| || || ||||||||||| ||||| |
|
|
| T |
27736886 |
catcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtatt |
27736819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 8028972 - 8029018
Alignment:
| Q |
62 |
attgcagacttgggttgctcttatggaccaaacactttgttggtgat |
108 |
Q |
| |
|
|||||||| |||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
8028972 |
attgcagatttgggttgttcttctgggccaaacactttgttggtgat |
8029018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University