View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1685_low_12 (Length: 203)
Name: NF1685_low_12
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1685_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 42918256 - 42918068
Alignment:
| Q |
1 |
ccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactattcttttccacctattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42918256 |
ccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactattcttttccacctattg |
42918157 |
T |
|
| Q |
101 |
atctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttttt |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42918156 |
atctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttttt |
42918068 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 23255146 - 23254958
Alignment:
| Q |
1 |
ccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactattcttttccacctattg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23255146 |
ccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactattcttttccacctattg |
23255047 |
T |
|
| Q |
101 |
atctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttttt |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23255046 |
atctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttttt |
23254958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 53536066 - 53535880
Alignment:
| Q |
1 |
ccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactattcttttccacctattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53536066 |
ccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactattcttttccacctattg |
53535967 |
T |
|
| Q |
101 |
atctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttt |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53535966 |
atctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttt |
53535880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 4755799 - 4755612
Alignment:
| Q |
1 |
ccattcagtagcatattctaacagtgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactattcttttccacctattg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4755799 |
ccattcagtagcatattctaaca-tgaataaatccaagcaatactcaaaacacaaaaatgaaagtaacttcaacatctcactattcttttccacctattg |
4755701 |
T |
|
| Q |
101 |
atctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttttt |
189 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4755700 |
atctaaataactaagaacctcttgcaccaattgaatatcacatttcctttgtgttggcaattcctttcttctttctaattgttcttttt |
4755612 |
T |
|
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