View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1685_low_4 (Length: 429)
Name: NF1685_low_4
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1685_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 35073743 - 35073330
Alignment:
| Q |
1 |
agcagagagtttcagaaacacatatcaggtatcaaataacannnnnnnctccttccaacttttgtttttgtgtagctactcaatcaaactaccaaaatat |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073743 |
agcaaagagtttcagaaacacatatcaggtatcaaataacatttttttctccttccaacttttgtttttgtgtagctactcaatcaaactaccaaaatat |
35073644 |
T |
|
| Q |
101 |
tcgcgacattagagcatgatattgatgcagtacctataggctatagctataatcacaaaataatgtactagatacaattttaaaattaattaaggcacgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073643 |
tcgcgacattagagcatgatattgatgcagtacctataggctatagctataatcacaaaataatgtactagatacaattttaaaattaattaaggcacgc |
35073544 |
T |
|
| Q |
201 |
gcttaaaaccaaaagctttgtatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataattcccgtccggtgcgt |
300 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073543 |
gcttaaaaccaaaagttttttatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataattcccgtccggtgcgt |
35073444 |
T |
|
| Q |
301 |
ttttaaccagcccaaagtctgcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagctttgctgagctaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073443 |
ttttaaccagcccaaagtctgcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagctttgctgagctaa |
35073344 |
T |
|
| Q |
401 |
gctgtgcaggtatt |
414 |
Q |
| |
|
|||||||||||||| |
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| T |
35073343 |
gctgtgcaggtatt |
35073330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 221 - 414
Target Start/End: Original strand, 38160024 - 38160217
Alignment:
| Q |
221 |
tatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataattcccgtccggtgcgtttttaaccagcccaaagtct |
320 |
Q |
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||||||||||||||| ||||| | |||||||||||||||||||||| ||||||| || ||||| || || |||||||| |||||||||| |||||| ||| |
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| T |
38160024 |
tatacctgcatactcaggtgccaaatatccaaatgttccagccaaccttgtctcgacggaatatttgccatccggtgcatttttaaccaacccaaaatct |
38160123 |
T |
|
| Q |
321 |
gcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagctttgctgagctaagctgtgcaggtatt |
414 |
Q |
| |
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|||||||||||||||||||||||||| || ||||| || || ||||||||||| || ||||||||||||||||||||||||||||||| ||||| |
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| T |
38160124 |
gcaacctttgctctcatgtcatcacccaacagtatgttggagggttttaagtccctgtgaatgaagctttgctgagctaagctgtgcaagtatt |
38160217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 412
Target Start/End: Complemental strand, 33056714 - 33056614
Alignment:
| Q |
312 |
ccaaagtctgcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagctttgctgagctaagctgtgcaggt |
411 |
Q |
| |
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||||| ||||| |||||||| ||||| ||||| || | || |||||||| ||||| |||||||| || ||||||||||| ||||| ||||| || |||| |
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| T |
33056714 |
ccaaaatctgcgacctttgccctcatatcatctccaaggagaatatttgaaggtttcaagtctctgtgtatgaagctttgatgagccaagctatgtaggt |
33056615 |
T |
|
| Q |
412 |
a |
412 |
Q |
| |
|
| |
|
|
| T |
33056614 |
a |
33056614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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