View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1685_low_5 (Length: 370)
Name: NF1685_low_5
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1685_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 27 - 353
Target Start/End: Original strand, 34936027 - 34936352
Alignment:
| Q |
27 |
aaaaatggtaaggttcatcacacttaccgaaggaaatccaaaacttcattttctcctcgaaaaaatgtaatttggttaggcaacaaaaataatgaaattt |
126 |
Q |
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| T |
34936027 |
aaaaatggtaaggttcatcagacttacagaaggaaatccaaaacttcattttctcctcgaaaaaatgcaatttgcttaggcaacaaaaataatgaaatt- |
34936125 |
T |
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| Q |
127 |
gatgatttgaattagctatcttagcatctaatattcacctgaacgnnnnnnnnaattaaacaaatgactacaacgtgcacattttgaaacttaacaataa |
226 |
Q |
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| T |
34936126 |
gatgatttgaattagctatcttagcatctaatattcacctgaacgttttttttaattaaacaaatgactacaacgtgcacattttgaaacttaacaataa |
34936225 |
T |
|
| Q |
227 |
ccaatattcaaaagaaattaacaacacaaaatgaaatatattaacgaaaaagtatttctaccaagcacatgatagaaatcaagagtacaaatatttcatt |
326 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34936226 |
ccaatattaaaaagaaactaacaacacaaaatgaaatatattaacgaaaaagtatttctaccaagcacatgatagaaatcaagagtacaaatatttcatt |
34936325 |
T |
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| Q |
327 |
gcataatcaaaacgcggaactaaaaac |
353 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34936326 |
gcataatcaaaacgcggaactaaaaac |
34936352 |
T |
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