View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1685_low_8 (Length: 275)

Name: NF1685_low_8
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1685_low_8
NF1685_low_8
[»] chr5 (5 HSPs)
chr5 (27-267)||(33496261-33496501)
chr5 (62-255)||(42577950-42578142)
chr5 (131-214)||(23150040-23150122)
chr5 (134-226)||(7273795-7273886)
chr5 (131-211)||(13093675-13093754)
[»] chr2 (1 HSPs)
chr2 (127-267)||(4243147-4243285)
[»] chr3 (3 HSPs)
chr3 (65-255)||(52966041-52966230)
chr3 (128-235)||(51141346-51141452)
chr3 (134-220)||(2500436-2500521)
[»] chr1 (4 HSPs)
chr1 (133-235)||(14647394-14647495)
chr1 (65-235)||(51492974-51493143)
chr1 (62-218)||(20128337-20128492)
chr1 (128-226)||(13189541-13189638)
[»] chr7 (4 HSPs)
chr7 (131-217)||(31801253-31801338)
chr7 (131-217)||(46598570-46598655)
chr7 (131-220)||(12351958-12352046)
chr7 (131-214)||(41146525-41146607)
[»] chr6 (3 HSPs)
chr6 (65-170)||(16861946-16862051)
chr6 (129-235)||(21731034-21731139)
chr6 (134-217)||(10160179-10160261)
[»] chr4 (2 HSPs)
chr4 (131-214)||(32498317-32498399)
chr4 (129-226)||(54422625-54422721)
[»] chr8 (3 HSPs)
chr8 (110-208)||(29929636-29929733)
chr8 (134-217)||(9181955-9182037)
chr8 (134-217)||(11626236-11626318)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 33496501 - 33496261
Alignment:
Q  27 attgttaacattttcatataaataagagttttgtgaactccttacttactcatgtcctcaaagctaaatactttcttatatgagatttattggacgaacc 126  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  33496501 attgtcaacattttcatataaataagggttttgtgaactccttacttactcatgtcctcaaagctaaatacttttttagatgggatttattggacgaacc 33496402  T
Q  127 gattggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaat 226  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33496401 gattggtcataatccaagctacacatggaggagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaat 33496302  T
Q  227 aaatctatgtaccatgccttgaatacgtaatctttcttctc 267  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  33496301 aaatctatgtaccatgccatgaatacgtaatctttcttctc 33496261  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 255
Target Start/End: Complemental strand, 42578142 - 42577950
Alignment:
Q  62 aactccttacttactcatgtcctcaaagctaaatactttcttatatgagatttattggacgaaccgattggtcataatccaagctacacatggacgagtc 161  Q
    |||||||||||||||| ||||||| ||||||||||||| | || | | ||||| ||||| |  ||  |||| |||||||||||||||||||||| |||||    
T  42578142 aactccttacttactcgtgtcctcgaagctaaatacttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtc 42578043  T
Q  162 catggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatgtaccatgccttgaatacgta 255  Q
      ||||| |||||| | ||| || || ||||||||||||||||||||||||||||| || || |||||| ||||  | |||||||| |||||||    
T  42578042 tttggagcactcaa-tctttacttaccttgggtcatagatggaagattggagatggttcaaacataaatgtatggtctatgccttggatacgta 42577950  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 23150040 - 23150122
Alignment:
Q  131 ggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggaga 214  Q
    |||||||||||||| |||||||||| ||||| ||||||||||| ||| ||| || || ||||| ||||| ||||| ||||||||    
T  23150040 ggtcataatccaagttacacatggaggagtctatggagtactc-aatctttacttaccttgggccataggtggaaaattggaga 23150122  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 7273795 - 7273886
Alignment:
Q  134 cataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaat 226  Q
    ||||||||||||||||||||||  || |  |||||||| | || |||| || || ||||||||| ||||||||||| ||||||| || |||||    
T  7273795 cataatccaagctacacatggagaagcctttggagtacac-aacatttacttaccttgggtcatggatggaagattagagatggttccaaaat 7273886  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 13093754 - 13093675
Alignment:
Q  131 ggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattgg 211  Q
    ||||||||||||||||  || |||| || ||  |||||||||| || ||||||| ||||||||| |||||||||| |||||    
T  13093754 ggtcataatccaagctttacttggaggaatctttggagtactc-aacatttgcttactttgggttatagatggaaaattgg 13093675  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 267
Target Start/End: Original strand, 4243147 - 4243285
Alignment:
Q  127 gattggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaat 226  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4243147 gattggtcataatccaagctatacatggaggagtctatggagtactcaa-tctttgctcactttgggtcatagatggaa-attggagatggctcgaaaat 4243244  T
Q  227 aaatctatgtaccatgccttgaatacgtaatctttcttctc 267  Q
    ||||||||| ||||||||||| |||||||||||| ||||||    
T  4243245 aaatctatggaccatgccttggatacgtaatcttccttctc 4243285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 52966230 - 52966041
Alignment:
Q  65 tccttacttactcatgtcctcaaagctaaatactttcttatatgagatttattggacgaaccgattggtcataatccaagctacacatggacgagtccat 164  Q
    ||||||||||||| ||| ||| ||||||||||||| | || | | ||||| ||||| |  ||  |||| |||||||||||||||||||||| |||||  |    
T  52966230 tccttacttactcgtgttctctaagctaaatacttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtcttt 52966131  T
Q  165 ggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatgtaccatgccttgaatacgta 255  Q
    |||| |||||| | ||| || || ||||||||||||||||||||||||||||| || || |||||| ||||  | |||||||| |||||||    
T  52966130 ggagcactcaa-tctttacttaccttgggtcatagatggaagattggagatggttcaaacataaatgtatggtctatgccttggatacgta 52966041  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 51141452 - 51141346
Alignment:
Q  128 attggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaata 227  Q
    ||||||||||||||||| ||||||||||  | ||  |||||||||||| ||| |||| || ||||||||||||||||||||||||||||| || ||||||    
T  51141452 attggtcataatccaagttacacatggagaattctttggagtactcaa-tatctgcttaccttgggtcatagatggaagattggagatggttcaaaaata 51141354  T
Q  228 aatctatg 235  Q
    ||| ||||    
T  51141353 aatgtatg 51141346  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 2500521 - 2500436
Alignment:
Q  134 cataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctc 220  Q
    ||||||||||| |||||||||| ||||| ||||||||||| ||| ||| || || ||||| ||||| ||||| |||||||| |||||    
T  2500521 cataatccaagttacacatggaggagtctatggagtactc-aatctttacttaccttgggccataggtggaaaattggagacggctc 2500436  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 14647394 - 14647495
Alignment:
Q  133 tcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatct 232  Q
    ||||||||||||||||| ||||| |||||  |||||||||||| | | |||| || ||||||||||||||||| ||||||||||| || ||||||||| |    
T  14647394 tcataatccaagctacatatggaggagtctttggagtactcaa-tctctgcttaccttgggtcatagatggaaaattggagatggttcaaaaataaatgt 14647492  T
Q  233 atg 235  Q
    |||    
T  14647493 atg 14647495  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 51493143 - 51492974
Alignment:
Q  65 tccttacttactcatgtcctcaaagctaaatactttcttatatgagatttattggacgaaccgattggtcataatccaagctacacatggacgagtccat 164  Q
    ||||||||||||| ||||||||||||||||||||| | || |   ||||| ||||| |  ||  |||| ||||||||||||||| |||||| | |||  |    
T  51493143 tccttacttactcgtgtcctcaaagctaaatacttccctagaatggatttcttggatgcccctcttggccataatccaagctacgcatggaggggtcttt 51493044  T
Q  165 ggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatg 235  Q
    |||| |||||| | ||| || || ||||||||||||||||||||||||| ||| || || |||||| ||||    
T  51493043 ggagcactcaa-tctttacttaccttgggtcatagatggaagattggagctggttcaaacataaatgtatg 51492974  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 20128337 - 20128492
Alignment:
Q  62 aactccttacttactcatgtcctcaaagctaaatactttcttatatgagatttattggacgaaccgattggtcataatccaagctacacatggacgagtc 161  Q
    ||||||||||| |||| |   |||||||| ||||||||||  ||| | ||||| ||||| | |||  |||||||||||||||||||||| |||| |||||    
T  20128337 aactccttactcactcgtactctcaaagccaaatactttcccatacgggatttcttggaagcacctcttggtcataatccaagctacacttggaggagtc 20128436  T
Q  162 catggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggc 218  Q
     ||||||||| | ||| | | || || ||||| ||||||||||||||||| ||||||    
T  20128437 tatggagtac-ccaatctcttcttaccttgggacatagatggaagattggtgatggc 20128492  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 13189638 - 13189541
Alignment:
Q  128 attggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaat 226  Q
    ||||| ||||||||||||||||| ||||  ||||  ||||||||||||  |||| || || |||||| |||||||||| |||||||||||||| |||||    
T  13189638 attggccataatccaagctacacttggagaagtctttggagtactcaac-atttacttaccttgggttatagatggaaaattggagatggctctaaaat 13189541  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 31801253 - 31801338
Alignment:
Q  131 ggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg 217  Q
    ||||||||||||||||| || |||| |||   ||||||||||||| | ||| || |||||||| |||||||||||||||||||||||    
T  31801253 ggtcataatccaagctatacttggaggagcttatggagtactcaa-tctttacttactttgggccatagatggaagattggagatgg 31801338  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 46598570 - 46598655
Alignment:
Q  131 ggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg 217  Q
    ||||||||||||||||| || |||| |||   ||||||||||||| | ||| || |||||||| |||||||||||||||||||||||    
T  46598570 ggtcataatccaagctatacctggaggagcttatggagtactcaa-tctttacttactttgggccatagatggaagattggagatgg 46598655  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 12352046 - 12351958
Alignment:
Q  131 ggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctc 220  Q
    |||||||||||||| |||||||||| ||||| ||||||||||| ||| ||| || || ||||| ||||| ||||| |||||||| |||||    
T  12352046 ggtcataatccaagttacacatggaggagtctatggagtactc-aatctttacttaccttgggccatagctggaaaattggagacggctc 12351958  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 41146525 - 41146607
Alignment:
Q  131 ggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggaga 214  Q
    |||||||||||||| |||||||||| ||||| ||||||||||| ||| ||| || || ||||| ||||| ||||| ||||||||    
T  41146525 ggtcataatccaagttacacatggaggagtctatggagtactc-aatctttacttaccttgggccataggtggaaaattggaga 41146607  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 16861946 - 16862051
Alignment:
Q  65 tccttacttactcatgtcctcaaagctaaatactttcttatatgagatttattggacgaaccgattggtcataatccaagctacacatggacgagtccat 164  Q
    ||||||||||||| |||||||||||| ||||| || | |  | | ||||| ||||| | |||  ||||||||||||||||||||||||||| |||||  |    
T  16861946 tccttacttactcgtgtcctcaaagccaaatatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctacacatggaggagtcttt 16862045  T
Q  165 ggagta 170  Q
    ||||||    
T  16862046 ggagta 16862051  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 21731139 - 21731034
Alignment:
Q  129 ttggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataa 228  Q
    ||||||||||||||||||||| ||||| |||||  |||||||||| ||| | | || || ||||| ||||||||||| ||| |||| || || |||||||    
T  21731139 ttggtcataatccaagctacatatggaggagtctttggagtactc-aatctcttcttaccttgggccatagatggaaaattagagacggttcaaaaataa 21731041  T
Q  229 atctatg 235  Q
    || ||||    
T  21731040 atgtatg 21731034  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 10160261 - 10160179
Alignment:
Q  134 cataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg 217  Q
    ||||||||||| || ||||||| ||||| ||||||||| | ||| ||| || || |||||||||||||||||||| || |||||    
T  10160261 cataatccaagttatacatggaggagtctatggagtacac-aatctttacttaccttgggtcatagatggaagataggtgatgg 10160179  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 32498317 - 32498399
Alignment:
Q  131 ggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggaga 214  Q
    |||||||||||||| |||||||||| ||||| ||||||||||| ||| ||| || || ||||| ||||| ||||| ||||||||    
T  32498317 ggtcataatccaagttacacatggaggagtctatggagtactc-aatctttacttaccttgggccataggtggaaaattggaga 32498399  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 54422721 - 54422625
Alignment:
Q  129 ttggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaat 226  Q
    ||||||| |||||||||||||| || | ||||| ||||||| | ||| | | |||| || ||||| |||||||||||||| || |||||||| |||||    
T  54422721 ttggtcacaatccaagctacacttgaaggagtctatggagtgcccaa-tctctgcttaccttggggcatagatggaagatcggtgatggctcaaaaat 54422625  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 29929733 - 29929636
Alignment:
Q  110 gatttattggacgaaccgattggtcataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagat 208  Q
    ||||| |||||||| ||  ||||||||||||||||| |||| || | |||||  ||||||| || || | ||||| |||||||||||||||||||||||    
T  29929733 gatttcttggacgaccctcttggtcataatccaagcaacacttgcaggagtctttggagta-tctaacacttgcttactttgggtcatagatggaagat 29929636  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 9182037 - 9181955
Alignment:
Q  134 cataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg 217  Q
    ||||||||||| || ||||||| ||||| ||||||||| | ||| ||| || || |||||||||||||||||||| || |||||    
T  9182037 cataatccaagttatacatggaggagtctatggagtacac-aatctttacttaccttgggtcatagatggaagataggtgatgg 9181955  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 11626236 - 11626318
Alignment:
Q  134 cataatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg 217  Q
    ||||||||||| || ||||||| ||||| ||||||||| | ||| ||| || || |||||||||||||||||||| || |||||    
T  11626236 cataatccaagttatacatggaggagtctatggagtacac-aatctttacttaccttgggtcatagatggaagataggtgatgg 11626318  T

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