View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1685_low_9 (Length: 254)
Name: NF1685_low_9
Description: NF1685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1685_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 30727267 - 30727486
Alignment:
| Q |
19 |
taaaggagataaataacggttatgactgagtgtgataaaatactatatagtaaactgtttaacttaagtttccaccaagctcatatggtatataatactg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30727267 |
taaaggagataaataacggttatgactgagtgtgataaaatactatatagtaaactgtttatcttaagtttccaccaagctcatatggtatataatactg |
30727366 |
T |
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| Q |
119 |
ttagtctgttactactg--tggtagtgtaacttaacttcaactatttagtatgtacctaaagtgtgtgccataatttaactcatttctattgtaccaaaa |
216 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
30727367 |
ttagtctgttactactgtctggtagtgtaacttaacttcaactatttagtatgtacctaaagtgtgtgccataatttaacacatttccattgtaccaaaa |
30727466 |
T |
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| Q |
217 |
acaagtgtatagcatctctg |
236 |
Q |
| |
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||||||||||||||| |||| |
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| T |
30727467 |
acaagtgtatagcatttctg |
30727486 |
T |
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