View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1686-Insertion-1 (Length: 911)

Name: NF1686-Insertion-1
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1686-Insertion-1
NF1686-Insertion-1
[»] chr8 (8 HSPs)
chr8 (8-440)||(39046712-39047143)
chr8 (505-911)||(39047208-39047620)
chr8 (581-690)||(5076263-5076372)
chr8 (580-690)||(4412597-4412707)
chr8 (519-576)||(9512438-9512495)
chr8 (612-689)||(37226988-37227065)
chr8 (577-630)||(5015426-5015479)
chr8 (654-691)||(35161494-35161531)
[»] chr4 (17 HSPs)
chr4 (24-369)||(26973493-26973834)
chr4 (580-682)||(22923321-22923423)
chr4 (580-682)||(22927974-22928076)
chr4 (580-682)||(22984253-22984355)
chr4 (580-682)||(22997841-22997943)
chr4 (577-691)||(54185607-54185721)
chr4 (578-690)||(12657194-12657308)
chr4 (577-691)||(45864951-45865065)
chr4 (577-690)||(1939365-1939478)
chr4 (580-677)||(32304853-32304950)
chr4 (601-690)||(50333980-50334069)
chr4 (580-691)||(49285492-49285603)
chr4 (578-691)||(41420632-41420743)
chr4 (518-576)||(43138908-43138966)
chr4 (577-669)||(156058-156150)
chr4 (521-572)||(16935543-16935594)
chr4 (577-624)||(21283799-21283846)
[»] chr1 (12 HSPs)
chr1 (580-691)||(1181497-1181608)
chr1 (577-691)||(16313900-16314014)
chr1 (577-690)||(7014985-7015098)
chr1 (576-674)||(43514353-43514451)
chr1 (612-691)||(12068014-12068093)
chr1 (595-682)||(9355411-9355498)
chr1 (581-691)||(49000783-49000893)
chr1 (580-690)||(33296425-33296535)
chr1 (625-682)||(16315368-16315425)
chr1 (609-681)||(25901345-25901417)
chr1 (609-690)||(25901396-25901477)
chr1 (581-670)||(44490679-44490768)
[»] chr5 (7 HSPs)
chr5 (580-690)||(12143809-12143919)
chr5 (577-690)||(29195198-29195311)
chr5 (577-691)||(35048688-35048801)
chr5 (577-690)||(2743853-2743966)
chr5 (586-682)||(20882908-20883004)
chr5 (580-691)||(13275031-13275142)
chr5 (577-629)||(40018105-40018157)
[»] chr6 (3 HSPs)
chr6 (586-691)||(1031791-1031896)
chr6 (580-691)||(7527068-7527179)
chr6 (577-691)||(35018739-35018853)
[»] chr2 (4 HSPs)
chr2 (577-691)||(19380219-19380333)
chr2 (577-691)||(5848090-5848204)
chr2 (580-682)||(11816083-11816185)
chr2 (586-629)||(187267-187310)
[»] chr7 (4 HSPs)
chr7 (577-690)||(44226520-44226633)
chr7 (579-682)||(432933-433036)
chr7 (580-690)||(23943729-23943839)
chr7 (516-576)||(47441624-47441684)
[»] chr3 (5 HSPs)
chr3 (580-691)||(46637060-46637171)
chr3 (579-691)||(46182936-46183048)
chr3 (577-629)||(30842114-30842166)
chr3 (576-630)||(20513508-20513562)
chr3 (580-691)||(34436977-34437088)
[»] scaffold0001 (1 HSPs)
scaffold0001 (577-629)||(185436-185488)
[»] scaffold0010 (1 HSPs)
scaffold0010 (579-629)||(28599-28649)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 440
Target Start/End: Original strand, 39046712 - 39047143
Alignment:
Q  8 aacacaacaatagatggagcatgaattttaagaagaaataatttgcttgggggagaacgaaaagggttcgttttgagatgtatttgctttatttttgact 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39046712 aacacaacaatagatagagcatgaattttaagaagaaataatttgcttgggggagaacgaaaagggttcgttttgagatgtgtttgctttatttttgact 39046811  T
Q  108 aaaaagatgtgattactttgtagctagtttaattgcttttgggatttgtctctaagtttcaaaaggtttgtcatgctctaaaataaagcaaaccagaagc 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39046812 aaaaagatgtgattactttgtagctggtttaattgcttttgggatttgtctctaagtttcaaaaggttcgtcatgctctaaaataaagcaaaccagaagc 39046911  T
Q  208 aactattataaggatgaaagaaagaaaggttgctaaagaaatcccaccgatttatctgtctcaaaccagtagcaattattataaggatgaaagaaaggaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  39046912 aactattataaggatgaaagaaagaaaggttgctaaagaaatcccaccgatttgtctgtctcaaaccagaagcaattattataaggatgaaagaaaggaa 39047011  T
Q  308 ttaatctccaatcggtggaataataattctaagttgaattgttatttaaattattctaaatttnnnnnnnnnnnntcggtggaatcaaaggttcctagag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||            |||||||||||||||||||||| ||    
T  39047012 ttaatctccaatcggtggaataataattctaagttgaattgttattttaattattctaaattt-ttttaaaaaaatcggtggaatcaaaggttcctaaag 39047110  T
Q  408 catgaatttagaataacagttcatactcttttt 440  Q
    |||||||||||||||||||||||||||||||||    
T  39047111 catgaatttagaataacagttcatactcttttt 39047143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 505 - 911
Target Start/End: Original strand, 39047208 - 39047620
Alignment:
Q  505 gttttattcgagcgtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta-------cagcgttaattaactaacgca 597  Q
    ||||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||       |||||||| ||||||||||||    
T  39047208 gttttattccagcgtgagttaacccacacggcattcgttaagtaacacagagtttaacacttgcgttatttaacctgcgcagcgttagttaactaacgca 39047307  T
Q  598 tagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattctnnnnnn 697  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||  |||||||| ||||||||||  ||||||||          
T  39047308 tagtttttcacttgcgttagttaactagcgcaaggataaatttaaaacgattgtagggcgcgaataaaatgtgttgggtggagaacagaattctaaaaaa 39047407  T
Q  698 nnnnntatgtaatgtaatcctttctcaatagtgaaaagcac--catagagtgatcttttggaagtccacacctatgatgtccctccatggcccaaaa-gt 794  Q
         |||||| ||||||| |||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39047408 aa---tatgta-tgtaatc-tttctcaatagtgaaaagcacaccatacagtgatcttttggaagtccacacctatgatgtccctccatggcccaaaaagt 39047502  T
Q  795 ttgtaaattcacttccatgaaccgactttccacccttttcacaatagatgcaccattaaagcgcgcttccacggaaacgccatagtttgaactcat-cca 893  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39047503 ttgtaaattcacttccatgaaccgactttccacccttttcacaatagatgcaccattaaagcgcgcttccacggaaacgccatagtttgaactcatccca 39047602  T
Q  894 gggtaatttggtattaga 911  Q
    || |||||||||||||||    
T  39047603 ggttaatttggtattaga 39047620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 581 - 690
Target Start/End: Original strand, 5076263 - 5076372
Alignment:
Q  581 gttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggag 680  Q
    |||| ||||||| ||||||||||| || |||||||||||||||| ||||||| ||||||| ||||| ||| ||||||||||||| |||||| ||||||||    
T  5076263 gttagttaactagcgcatagttttacatttgcgttagttaactaacgcaatggtaaatttgaaacggctgcaaggcgcgagcaacatgtgcagggtggag 5076362  T
Q  681 agtagaattc 690  Q
    || |||||||    
T  5076363 agcagaattc 5076372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 580 - 690
Target Start/End: Complemental strand, 4412707 - 4412597
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| |||| || ||||||||||| || |||||| |||||| |||||||| | |||||||  |||| ||| | |||||||||||||||||||||||  |    
T  4412707 cgttagttaattagcgcatagttttacacttgcgtgagttaattagcgcaaaggtaaatttggaacggctgcagggcgcgagcaaaatgtgctgggtaaa 4412608  T
Q  680 gagtagaattc 690  Q
    ||| |||||||    
T  4412607 gagcagaattc 4412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 519 - 576
Target Start/End: Original strand, 9512438 - 9512495
Alignment:
Q  519 tgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 576  Q
    ||||||||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||    
T  9512438 tgagttaactcacgcagcgttagttaaataacacagagtttaacacttgcgttactta 9512495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 612 - 689
Target Start/End: Complemental strand, 37227065 - 37226988
Alignment:
Q  612 cgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaatt 689  Q
    ||||||||||||||| ||| | |||||||  || | ||| | |||||||||||||||||||||||| |||| ||||||    
T  37227065 cgttagttaactagcacaaaggtaaatttggaatggctgcagggcgcgagcaaaatgtgctgggtgaagagcagaatt 37226988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 630
Target Start/End: Complemental strand, 5015479 - 5015426
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaa 630  Q
    |||||||| ||||||| ||||||||||| ||  ||||||||||||||| |||||    
T  5015479 cagcgttagttaactagcgcatagttttacacgtgcgttagttaactaacgcaa 5015426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 691
Target Start/End: Complemental strand, 35161531 - 35161494
Alignment:
Q  654 ggcgcgagcaaaatgtgctgggtggagagtagaattct 691  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  35161531 ggcgcgagcaaaatgtgcagggtgaagagtagaattct 35161494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 24 - 369
Target Start/End: Original strand, 26973493 - 26973834
Alignment:
Q  24 gagcatgaattttaagaagaaataatttgcttgggggagaacgaaaagggttcgttttgagatgtatttgctttatttttgactaaaaagatgtgattac 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  26973493 gagcatgaattttaagaagaaataatttgcttgggggagaacgaaaggggttcgttttgagatgtgtttgctttatttttgactaaaaagatgtgattat 26973592  T
Q  124 tttgtagctagtttaattgcttttgggatttgtctctaagtttcaaaaggtttgtcatgctctaaaataaagcaaaccagaagcaactattataaggatg 223  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  26973593 tttgtagctggtttaattgcttttgggatttgtctcaaagtttcaaaaggtttgtcacgctctaaaataaagcaaaccagaagcaattattataaggatg 26973692  T
Q  224 aaagaaagaaaggttgctaaagaaatcccaccgatttatctgtctcaaaccagtagcaattattataaggatgaaagaaaggaattaatctccaatcggt 323  Q
    |||||||||||||||||| ||||||||||||    | || ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  26973693 aaagaaagaaaggttgctgaagaaatcccac----taatttgtctcaaaccagaagcaattattataaggatgaaagaaaggaatgaatctccaatcggt 26973788  T
Q  324 ggaataataattctaagttgaattgttatttaaattattctaaatt 369  Q
    | |||||| |||||||||||||||||||||| ||||||||||||||    
T  26973789 gcaataattattctaagttgaattgttattttaattattctaaatt 26973834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 580 - 682
Target Start/End: Original strand, 22923321 - 22923423
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22923321 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22923420  T
Q  680 gag 682  Q
    |||    
T  22923421 gag 22923423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 580 - 682
Target Start/End: Original strand, 22927974 - 22928076
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22927974 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22928073  T
Q  680 gag 682  Q
    |||    
T  22928074 gag 22928076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 580 - 682
Target Start/End: Original strand, 22984253 - 22984355
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22984253 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22984352  T
Q  680 gag 682  Q
    |||    
T  22984353 gag 22984355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 580 - 682
Target Start/End: Original strand, 22997841 - 22997943
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||    
T  22997841 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcaaggcgcgagcaaaatgtgctgggtgga 22997940  T
Q  680 gag 682  Q
    |||    
T  22997941 gag 22997943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 577 - 691
Target Start/End: Original strand, 54185607 - 54185721
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| ||||||| ||||||||||| || |||||||||||||||||||||| | ||||||| ||||| ||| | |||||||||||||| ||| ||||    
T  54185607 cagcgttacttaactagcgcatagttttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcagggcgcgagcaaaatatgcagggt 54185706  T
Q  677 ggagagtagaattct 691  Q
    |||||| ||||||||    
T  54185707 ggagagcagaattct 54185721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 578 - 690
Target Start/End: Original strand, 12657194 - 12657308
Alignment:
Q  578 agcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaag--gcgcgagcaaaatgtgctggg 675  Q
    ||||||| ||||||||| |||||||||||| ||| |||||||||||||||||| | |||||||  |||| ||| | |  |||||||||||||||||||||    
T  12657194 agcgttagttaactaacacatagtttttcacttgtgttagttaactagcgcaagggtaaatttggaacggctgcagggcgcgcgagcaaaatgtgctggg 12657293  T
Q  676 tggagagtagaattc 690  Q
    ||||||| |||||||    
T  12657294 tggagagcagaattc 12657308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 577 - 691
Target Start/End: Original strand, 45864951 - 45865065
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| ||||||||||||||||||| || |||| |||||||||||||||||   |||||||| ||||  || | |||||||||||||||||| ||||    
T  45864951 cagcgttacttaactaacgcatagttttacacttgcattagttaactagcgcaagagtaaatttagaacggttgcagggcgcgagcaaaatgtgcagggt 45865050  T
Q  677 ggagagtagaattct 691  Q
    ||| || ||||||||    
T  45865051 ggatagcagaattct 45865065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 577 - 690
Target Start/End: Original strand, 1939365 - 1939478
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| ||||||| |||||   ||| || ||||||||||||||||||| || |||||||||  |||| ||| | |||||||||||||||||||||||    
T  1939365 cagcgttagttaactagcgcatgcatttacacttgcgttagttaactagcgtaaggataaatttggaacggctgcagggcgcgagcaaaatgtgctgggt 1939464  T
Q  677 ggagagtagaattc 690  Q
     ||||| |||||||    
T  1939465 agagagcagaattc 1939478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 580 - 677
Target Start/End: Complemental strand, 32304950 - 32304853
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtg 677  Q
    ||||| ||||||||| ||||||||| || |||||| ||||||||||||||| | |||||||| |||| ||| ||| |||||||||||||||| |||||    
T  32304950 cgttagttaactaacacatagttttacacttgcgtgagttaactagcgcaagggtaaatttagaacggctgcaagacgcgagcaaaatgtgcagggtg 32304853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 601 - 690
Target Start/End: Complemental strand, 50334069 - 50333980
Alignment:
Q  601 tttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattc 690  Q
    ||||||| |||||||||||||||||||||| | |||||||  ||||  |||| || ||||||||||||||| |||||||||| |||||||    
T  50334069 tttttcacttgcgttagttaactagcgcaagggtaaatttggaacggttgtagggtgcgagcaaaatgtgccgggtggagagcagaattc 50333980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 580 - 691
Target Start/End: Complemental strand, 49285603 - 49285492
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||| ||||||||||| || |||| |||||||| ||  |||| | ||||||||||||| ||  ||| |||||||||||||||| |||||||    
T  49285603 cgttacttaactagcgcatagttttacacttgcattagttaattaatgcaagggtaaatttaaaacggctacaagccgcgagcaaaatgtgcagggtgga 49285504  T
Q  680 gagtagaattct 691  Q
     || ||||||||    
T  49285503 aagcagaattct 49285492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 691
Target Start/End: Original strand, 41420632 - 41420743
Alignment:
Q  578 agcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtg 677  Q
    ||||||| ||||||| ||||||||||| ||  ||||||| |||||||||||||   |||||||  |||| ||| | ||||||| |||||| |||  ||||    
T  41420632 agcgttagttaactagcgcatagttttaca--tgcgttacttaactagcgcaagagtaaatttggaacggctgcatggcgcgaacaaaatatgcaaggtg 41420729  T
Q  678 gagagtagaattct 691  Q
     |||||||||||||    
T  41420730 aagagtagaattct 41420743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 518 - 576
Target Start/End: Complemental strand, 43138966 - 43138908
Alignment:
Q  518 gtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 576  Q
    |||||||||| ||||| ||||| ||||||||| || ||||||||||||||||| |||||    
T  43138966 gtgagttaacacacgcagcgttagttaagtaacacggagtttaacacttgcgtcactta 43138908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 577 - 669
Target Start/End: Complemental strand, 156150 - 156058
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgt 669  Q
    |||||||||||||||| | |||| |||| || |||||||||||||||| || || |||| ||||  || | ||| | ||||||||||||||||    
T  156150 cagcgttaattaactagcacataattttacacttgcgttagttaactaacgtaaggatatatttggaatggctgcagggcgcgagcaaaatgt 156058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 572
Target Start/End: Complemental strand, 16935594 - 16935543
Alignment:
Q  521 agttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgtta 572  Q
    ||||||| ||||| ||||| ||||||||  ||||||||||||||||||||||    
T  16935594 agttaactcacgcagcgttagttaagtagcacagagtttaacacttgcgtta 16935543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 624
Target Start/End: Complemental strand, 21283846 - 21283799
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaacta 624  Q
    |||||||| ||||||||| ||||||||| || ||||||||||||||||    
T  21283846 cagcgttagttaactaacacatagttttacacttgcgttagttaacta 21283799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 1e-34; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 580 - 691
Target Start/End: Original strand, 1181497 - 1181608
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||| ||||||| | ||||||||||||||||||||||||    
T  1181497 cgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaaagactgtaggacgcgagcaaaatgtgctgggtgga 1181596  T
Q  680 gagtagaattct 691  Q
    ||| ||||||||    
T  1181597 gagcagaattct 1181608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 577 - 691
Target Start/End: Complemental strand, 16314014 - 16313900
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||| ||||| ||| | | |||||||||||||||||||||    
T  16314014 cagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttgaaacggctgcatgacgcgagcaaaatgtgctgggt 16313915  T
Q  677 ggagagtagaattct 691  Q
    |||||| | ||||||    
T  16313914 ggagagcataattct 16313900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 577 - 690
Target Start/End: Original strand, 7014985 - 7015098
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | |||||||||||||||||||||||    
T  7014985 cagcgttagttaactaacgcgtagtttttcacttgcgttagttaactagcgcaagggtaaatttcgaacggctgcagggcgcgagcaaaatgtgctgggt 7015084  T
Q  677 ggagagtagaattc 690  Q
    |||||| |||||||    
T  7015085 ggagagcagaattc 7015098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 576 - 674
Target Start/End: Complemental strand, 43514451 - 43514353
Alignment:
Q  576 acagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgg 674  Q
    |||| |||| |||||||  |||||||||| || |||||||||||||||| ||||| | ||||||||||||| ||| | | |||||||||||||||||||    
T  43514451 acagtgttacttaactagtgcatagttttacacttgcgttagttaactaacgcaagggtaaatttaaaacggctgcaggacgcgagcaaaatgtgctgg 43514353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 612 - 691
Target Start/End: Original strand, 12068014 - 12068093
Alignment:
Q  612 cgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattct 691  Q
    ||||||||||||| ||||| |||||||||  |||| ||| | ||||||||||||||||||||||||||||| | ||||||    
T  12068014 cgttagttaactaacgcaaggataaatttggaacggctgcagggcgcgagcaaaatgtgctgggtggagagcataattct 12068093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 595 - 682
Target Start/End: Original strand, 9355411 - 9355498
Alignment:
Q  595 gcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 682  Q
    |||||||||| || |||||||||||||||||||||| | |||| |||||||    | | |||||||||||||||||| ||||||||||    
T  9355411 gcatagttttacacttgcgttagttaactagcgcaagggtaaacttaaaacaggcgcagggcgcgagcaaaatgtgcagggtggagag 9355498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 581 - 691
Target Start/End: Original strand, 49000783 - 49000893
Alignment:
Q  581 gttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggag 680  Q
    |||| ||||||| ||||||  ||| || |||||| |||||||||| |||| | |||||||| |||| ||  | |||||||||||||||||||||||| ||    
T  49000783 gttagttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttagaacggctacagggcgcgagcaaaatgtgctgggtgaag 49000882  T
Q  681 agtagaattct 691  Q
    || | ||||||    
T  49000883 agcaaaattct 49000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 580 - 690
Target Start/End: Complemental strand, 33296535 - 33296425
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||| ||||||  ||| || |||||| ||||||||| ||||| | |||||||  |||   |||| ||||||||||||||||||||| || |    
T  33296535 cgttagttaactagcgcatacatttacacttgcgtgagttaactaacgcaagggtaaatttggaacagatgtagggcgcgagcaaaatgtgctggatgaa 33296436  T
Q  680 gagtagaattc 690  Q
    ||| |||||||    
T  33296435 gagcagaattc 33296425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 682
Target Start/End: Original strand, 16315368 - 16315425
Alignment:
Q  625 gcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 682  Q
    |||||| |||||||||  |||| ||||| |||||||||||||||||| ||||||||||    
T  16315368 gcgcaaggataaatttggaacggctgtagggcgcgagcaaaatgtgcagggtggagag 16315425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 609 - 681
Target Start/End: Complemental strand, 25901417 - 25901345
Alignment:
Q  609 ttgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggaga 681  Q
    ||||| |||||||||| ||||| | |||||||   ||| || || ||||||||||||||||||||||||||||    
T  25901417 ttgcgctagttaactaacgcaagggtaaatttggtacggctatagggcgcgagcaaaatgtgctgggtggaga 25901345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 690
Target Start/End: Original strand, 25901396 - 25901477
Alignment:
Q  609 ttgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtagaattc 690  Q
    |||||||||||||||||||||| | | |||||   ||||||| | | || ||||||||||| || ||||||||| |||||||    
T  25901396 ttgcgttagttaactagcgcaaaggtgaatttggtacgactgcaggacgtgagcaaaatgtacttggtggagagcagaattc 25901477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 670
Target Start/End: Original strand, 44490679 - 44490768
Alignment:
Q  581 gttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtg 670  Q
    |||| ||||||| ||||||  ||| || |||||| |||||||||| |||| | |||||||  |||| ||| | |||||||||||||||||    
T  44490679 gttagttaactagcgcatacatttacacttgcgtgagttaactagtgcaagggtaaatttggaacggctgcagggcgcgagcaaaatgtg 44490768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 580 - 690
Target Start/End: Complemental strand, 12143919 - 12143809
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||| |||| ||| | ||||||||||||||||||| ||||||    
T  12143919 cgttagttaactaacacatagtttttcacttgcgttagttaactagcgcaaaggtaaatttagaacggctgcagggcgcgagcaaaatgtgctaggtgga 12143820  T
Q  680 gagtagaattc 690  Q
    ||| |||||||    
T  12143819 gagcagaattc 12143809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 577 - 690
Target Start/End: Complemental strand, 29195311 - 29195198
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||||||  |||| | | | || ||||||||||| ||||||||    
T  29195311 cagcgttagttaactaacgcatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggccgcagggagcgagcaaaatatgctgggt 29195212  T
Q  677 ggagagtagaattc 690  Q
    |||||| |||||||    
T  29195211 ggagagcagaattc 29195198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 577 - 691
Target Start/End: Complemental strand, 35048801 - 35048688
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| ||||||||||||| |||||||| |||||||| ||||||| ||||| | ||||||| ||||| ||| | || ||||||||||||||||||||    
T  35048801 cagcgttagttaactaacgcat-gtttttcacttgcgttaattaactaacgcaagggtaaatttgaaacggctgcagggagcgagcaaaatgtgctgggt 35048703  T
Q  677 ggagagtagaattct 691  Q
    |||||| ||||||||    
T  35048702 ggagagcagaattct 35048688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 577 - 690
Target Start/End: Original strand, 2743853 - 2743966
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| ||||||| ||||||  ||| || || ||| ||||||||||||||| |||||||||  |||| ||| ||||| |||||||||||||||||||    
T  2743853 cagcgttagttaactagcgcatacatttacacttacgtgagttaactagcgcaaggataaatttggaacggctgcaaggcacgagcaaaatgtgctgggt 2743952  T
Q  677 ggagagtagaattc 690  Q
    | |||| |||||||    
T  2743953 gaagagcagaattc 2743966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 586 - 682
Target Start/End: Complemental strand, 20883004 - 20882908
Alignment:
Q  586 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagag 682  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | |||| |||||||||  |||||||||||||    
T  20883004 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctgcatggcgtgagcaaaatacgctgggtggagag 20882908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 580 - 691
Target Start/End: Original strand, 13275031 - 13275142
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||| | ||||  ||| || |||||| ||||||||||||||||| |||||||  ||||  || | |||||||||||||||||| ||||| |    
T  13275031 cgttagttaactagcacatacatttacacttgcgtgagttaactagcgcaatggtaaattttgaacggttgcagggcgcgagcaaaatgtgcggggtgaa 13275130  T
Q  680 gagtagaattct 691  Q
    ||| ||||||||    
T  13275131 gaggagaattct 13275142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 577 - 629
Target Start/End: Complemental strand, 40018157 - 40018105
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 629  Q
    |||| ||| ||||||||||||||||||| || |||||||||||||||| ||||    
T  40018157 cagcattagttaactaacgcatagttttacacttgcgttagttaactaacgca 40018105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 586 - 691
Target Start/End: Original strand, 1031791 - 1031896
Alignment:
Q  586 ttaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtggagagtag 685  Q
    ||||||||| |||||||||||| |||||||||||||||||||||| | |||||||  |||| ||| | || |||||||||||||||||||||||||| ||    
T  1031791 ttaactaacacatagtttttcacttgcgttagttaactagcgcaagggtaaatttggaacggctggacggtgcgagcaaaatgtgctgggtggagagcag 1031890  T
Q  686 aattct 691  Q
    | ||||    
T  1031891 agttct 1031896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 580 - 691
Target Start/End: Original strand, 7527068 - 7527179
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||||| |||| |||| || |||||| ||||||||||||||| | |||||||| |||| ||| | |||||||||||||||| |||| || |    
T  7527068 cgttagttaactaacacataattttacacttgcgtgagttaactagcgcaagggtaaatttagaacggctgcagggcgcgagcaaaatgtactggatgaa 7527167  T
Q  680 gagtagaattct 691  Q
    ||| | ||||||    
T  7527168 gagcataattct 7527179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 577 - 691
Target Start/End: Original strand, 35018739 - 35018853
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| |||| |||||||||||||| || |||||| |||||||||| || | | |||||||  |||| ||| | | ||||||||||||||| |||||    
T  35018739 cagcgttagttaaataacgcatagttttacacttgcgtgagttaactagtgcgagggtaaatttggaacggctgcaggacgcgagcaaaatgtgttgggt 35018838  T
Q  677 ggagagtagaattct 691  Q
    | |||| ||||||||    
T  35018839 gaagagcagaattct 35018853  T

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Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 577 - 691
Target Start/End: Original strand, 19380219 - 19380333
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| ||||||||||||||  ||| || ||||||||||||||||||||||   |||||||  |||| ||| | |||||||||||||||||||||||    
T  19380219 cagcgttagttaactaacgcatacatttacacttgcgttagttaactagcgcaagagtaaatttggaacggctgcagggcgcgagcaaaatgtgctgggt 19380318  T
Q  677 ggagagtagaattct 691  Q
    |||||| | ||||||    
T  19380319 ggagagcaaaattct 19380333  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 577 - 691
Target Start/End: Original strand, 5848090 - 5848204
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| ||||||| ||||||||||| || || ||||||||||||||||||| | |||||||  || | |||   |||||||||||||||||| ||||    
T  5848090 cagcgttacttaactagcgcatagttttacacttacgttagttaactagcgcaagggtaaatttggaatggctgctgggcgcgagcaaaatgtgcagggt 5848189  T
Q  677 ggagagtagaattct 691  Q
    ||| || ||||||||    
T  5848190 ggatagcagaattct 5848204  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 580 - 682
Target Start/End: Original strand, 11816083 - 11816185
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| |||||||  |||||||||| || |||||| ||||||||||||||| | ||||||| ||||| ||| | ||  ||||||||||||| |||||| |    
T  11816083 cgttagttaactagtgcatagttttacacttgcgtgagttaactagcgcaagggtaaatttgaaacggctgcagggtacgagcaaaatgtgatgggtgaa 11816182  T
Q  680 gag 682  Q
    |||    
T  11816183 gag 11816185  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 629
Target Start/End: Original strand, 187267 - 187310
Alignment:
Q  586 ttaactaacgcatagtttttcaattgcgttagttaactagcgca 629  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  187267 ttaactaacgcatagttttacacttgcgttagttaactaacgca 187310  T

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Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 577 - 690
Target Start/End: Original strand, 44226520 - 44226633
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggt 676  Q
    |||||||| ||||||||| |||||||||||| ||||||| ||||||||| |||| | ||||||| ||||| ||  | ||| ||| |||||||||||||||    
T  44226520 cagcgttagttaactaacacatagtttttcacttgcgttggttaactagagcaagggtaaatttgaaacggctacagggcacgaacaaaatgtgctgggt 44226619  T
Q  677 ggagagtagaattc 690  Q
    |||||| |||||||    
T  44226620 ggagagcagaattc 44226633  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 579 - 682
Target Start/End: Original strand, 432933 - 433036
Alignment:
Q  579 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgg 678  Q
    |||||| |||||||||||||| |||| || |||||||||||||||||||||| | ||||||| ||||| |||   || ||||||||||||||| ||||||    
T  432933 gcgttagttaactaacgcataattttacacttgcgttagttaactagcgcaagggtaaatttgaaacggctgccgggtgcgagcaaaatgtgcagggtgg 433032  T
Q  679 agag 682  Q
    ||||    
T  433033 agag 433036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 580 - 690
Target Start/End: Original strand, 23943729 - 23943839
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||| ||||||||||| ||  ||||||||||||||| ||||| | || ||||| |||| ||| |  ||||||||||||||||| ||||| |    
T  23943729 cgttagttaactagcgcatagttttacacctgcgttagttaactaacgcaagggtatatttagaacggctgcagagcgcgagcaaaatgtgcagggtgaa 23943828  T
Q  680 gagtagaattc 690  Q
    ||| |||||||    
T  23943829 gagcagaattc 23943839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 576
Target Start/End: Complemental strand, 47441684 - 47441624
Alignment:
Q  516 gcgtgagttaacccacgcggcgttcgttaagtaatacagagtttaacacttgcgttactta 576  Q
    |||||||||||| ||||| || || |||||||||  |||||||||||||||||||||||||    
T  47441684 gcgtgagttaactcacgcagctttagttaagtaacgcagagtttaacacttgcgttactta 47441624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 580 - 691
Target Start/End: Original strand, 46637060 - 46637171
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||| ||||||||||| || ||||||||||||||||||| || |||||||||  |||| ||| | |||||||||||||||||| || ||||    
T  46637060 cgttacttaactagcgcatagttttacatttgcgttagttaactagcgtaaggataaatttggaacggctgcatggcgcgagcaaaatgtgcaggatgga 46637159  T
Q  680 gagtagaattct 691  Q
    ||| | ||||||    
T  46637160 gagcataattct 46637171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 579 - 691
Target Start/End: Complemental strand, 46183048 - 46182936
Alignment:
Q  579 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgg 678  Q
    |||||| |||||||||||||| |||| || |||||||| ||||||||||||| | ||||||| ||||| ||| | || | |||||||||||||  |||||    
T  46183048 gcgttagttaactaacgcataattttacacttgcgttatttaactagcgcaagggtaaatttgaaacggctgcagggtgtgagcaaaatgtgcaaggtgg 46182949  T
Q  679 agagtagaattct 691  Q
    |||| ||||||||    
T  46182948 agagcagaattct 46182936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 629
Target Start/End: Original strand, 30842114 - 30842166
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 629  Q
    |||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||    
T  30842114 cagcgttagttaactaacgcataggtttacaattacgttagttaactagcgca 30842166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 576 - 630
Target Start/End: Complemental strand, 20513562 - 20513508
Alignment:
Q  576 acagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaa 630  Q
    ||||||||| ||||||| ||||||||||| || |||||||||||||||| |||||    
T  20513562 acagcgttagttaactatcgcatagttttacacttgcgttagttaactaacgcaa 20513508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 691
Target Start/End: Complemental strand, 34437088 - 34436977
Alignment:
Q  580 cgttaattaactaacgcatagtttttcaattgcgttagttaactagcgcaatgataaatttaaaacgactgtaaggcgcgagcaaaatgtgctgggtgga 679  Q
    ||||| ||||||| ||||||  ||| || |||||| |||||||||||| || | |||||||  |||| ||| | | ||||||||||||||||| | || |    
T  34437088 cgttagttaactagcgcatacatttacacttgcgtgagttaactagcgtaagggtaaatttggaacggctgcaggacgcgagcaaaatgtgcttgatgaa 34436989  T
Q  680 gagtagaattct 691  Q
    ||| ||||||||    
T  34436988 gagcagaattct 34436977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 629
Target Start/End: Complemental strand, 185488 - 185436
Alignment:
Q  577 cagcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 629  Q
    |||||||| ||||||||||||||||||| || |||||||||||||||| ||||    
T  185488 cagcgttagttaactaacgcatagttttacacttgcgttagttaactaacgca 185436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 579 - 629
Target Start/End: Complemental strand, 28649 - 28599
Alignment:
Q  579 gcgttaattaactaacgcatagtttttcaattgcgttagttaactagcgca 629  Q
    |||||| |||||||||||||| |||| || |||||||||||||||| ||||    
T  28649 gcgttagttaactaacgcataattttacacttgcgttagttaactaacgca 28599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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