View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686-Insertion-2 (Length: 782)
Name: NF1686-Insertion-2
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 332
Target Start/End: Original strand, 9394724 - 9395047
Alignment:
| Q |
8 |
agactatcatcgcctttcacattgtatttttgtcttccctcattagggaaacggtacaagtgaaacgtatacaccaattgatatattgaactaata---t |
104 |
Q |
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| T |
9394724 |
agactatcattgcctttcacattgtatttttgtcttccctcattagagaaacggtacaagtgaaacgtatacaccaattgatatattgaactaataatat |
9394823 |
T |
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| Q |
105 |
accaagatttggtccttttccaaattcatatgttgcttaccgcttcnnnnnnnnnnnnnnnagaaaagatggcaaagttcaaagagnnnnnnnntattta |
204 |
Q |
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| T |
9394824 |
accaagatttggtccttttccaaattcatatgttgcttaccgcttttttttttttttttt---aaaagatggcaaagttcaaagagaaaaaaa-tattta |
9394919 |
T |
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| Q |
205 |
tatttacataatcgttctagtgcaaatattggggaggtgatttgcaggtaaagaaacaaaaataagcatagaaatttgcaggtataaaatatccgctcaa |
304 |
Q |
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| T |
9394920 |
tatttacataatcgttctagtgcaaatattggggaggtgatttgcaggtaaagaaacaaaaataagcatagaaatttgcaggtataaaatatccgctcaa |
9395019 |
T |
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| Q |
305 |
atgttagaaaacctataacattagttgc |
332 |
Q |
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| T |
9395020 |
atgttagaaaacctataacattagttgc |
9395047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 375 - 535
Target Start/End: Original strand, 9395090 - 9395250
Alignment:
| Q |
375 |
cagagttaggttgatgtccataatttctctttcttcttttgttctttcttaatggatagttgcatctttgtgatgcatgcatatagttcactatagacat |
474 |
Q |
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| T |
9395090 |
cagagttaggttgatgtccataatttctctttcttcttttgttctttcttaatggatagttgcatctttgtgatgcatgcatatagttcactatagacat |
9395189 |
T |
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| Q |
475 |
atttgactatacatcaaatgttgtctacccagaatgaaactagcgtgcataaggggaaaca |
535 |
Q |
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| T |
9395190 |
atttgactatatatcaaatgttgtctacccagaatgaaactagcgtgcataaggggaaaca |
9395250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 9392795 - 9392851
Alignment:
| Q |
10 |
actatcatcgcctttcacattgtatttttgtcttccctcattagggaaacggtacaa |
66 |
Q |
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| T |
9392795 |
actatcattgcctttcacattgtatttttgtcttccctcattagagaaacggtacaa |
9392851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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