View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686-Insertion-3 (Length: 578)
Name: NF1686-Insertion-3
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 8 - 549
Target Start/End: Original strand, 38412360 - 38412919
Alignment:
| Q |
8 |
aggggaaaatatcacaatatatagtgcacactagtaaataacagaaaccgaaatacttcattggactccgatttttctctctttattttagactcatagc |
107 |
Q |
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| T |
38412360 |
aggggaaaatatcacaatatatagtgcacactagtaaataacagaaaccgaaatacttcgttgcactccgatttttctctctttattttagactcatagc |
38412459 |
T |
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| Q |
108 |
atggtatccaaaagtcaaaacgaaccctgactaatccgagtgtaaagataatgtctagttatgattcacagtaaagataattactaagcaataaactgat |
207 |
Q |
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| T |
38412460 |
atggtatccaaaagtcacaacgaaccctgactaatccgagtgtaaagataatgtctagttatgattcgcagtaaagataattactaagcaataaactgat |
38412559 |
T |
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| Q |
208 |
tttaacaaagatataagaaatcacccatgtagcatcggtgtttgacacaaacacacatgtgtccaactcttcataggaaataacaaaacatatatggaac |
307 |
Q |
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| T |
38412560 |
tttaacaaagagataagaaatcacccatgtagcatcggtgtttgacacaaacacacatgtgtccaactcttcataggaaataacaaaacatatatggaac |
38412659 |
T |
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| Q |
308 |
c---------------------ttaaggattaatataaaaatccaaacctagcagcaagtaagt-aattacgagatggaaatgaatttaattgcaacatc |
385 |
Q |
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| T |
38412660 |
cttaatctttcaaaaaaaaaaattaaggattaatataaaaatccaaacctagcagcaagtaagtaaattacgagatggaaatgaatttaattgcaacatc |
38412759 |
T |
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| Q |
386 |
attcatctcatccatccatccacgatttcataaattagaagaaagtgcgtaaagtaataattgaaagagggaaaaggggcttaccggaagcagaaacgga |
485 |
Q |
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| T |
38412760 |
attcatct----catccatccacgatttcataaattagaagaaagtgcgtaaagtaataattgaaagagggaaaaggggcttaccggaagcagaaacgga |
38412855 |
T |
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| Q |
486 |
aagtgatcgaatagagagaggtttagggctaaaacggcgattgagaattggtgttgaagatcga |
549 |
Q |
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| T |
38412856 |
aagtgatcgaatagagagaggtttagggctaaaacggcgattgagaattggtgttgaagatcga |
38412919 |
T |
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