View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1686-Insertion-9 (Length: 386)

Name: NF1686-Insertion-9
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1686-Insertion-9
NF1686-Insertion-9
[»] chr4 (22 HSPs)
chr4 (8-386)||(19325207-19325592)
chr4 (156-222)||(20243600-20243667)
chr4 (96-223)||(12235821-12235942)
chr4 (95-151)||(9266785-9266841)
chr4 (154-215)||(15521967-15522029)
chr4 (109-193)||(5718745-5718827)
chr4 (113-223)||(46342521-46342630)
chr4 (109-189)||(46979101-46979180)
chr4 (109-195)||(11861799-11861883)
chr4 (117-197)||(12790921-12790999)
chr4 (126-216)||(13063948-13064037)
chr4 (109-167)||(24619175-24619231)
chr4 (156-197)||(13977716-13977757)
chr4 (106-169)||(55745733-55745793)
chr4 (106-169)||(55756344-55756404)
chr4 (109-145)||(12235804-12235840)
chr4 (109-149)||(13066937-13066977)
chr4 (95-151)||(14154545-14154601)
chr4 (117-215)||(15736285-15736382)
chr4 (106-150)||(18394031-18394075)
chr4 (107-147)||(32491406-32491446)
chr4 (126-169)||(56034108-56034149)
[»] chr3 (14 HSPs)
chr3 (95-223)||(19264203-19264328)
chr3 (95-196)||(4507721-4507820)
chr3 (109-223)||(31779237-31779349)
chr3 (107-216)||(8109325-8109433)
chr3 (107-150)||(7921292-7921335)
chr3 (95-150)||(12756036-12756091)
chr3 (107-150)||(13931454-13931497)
chr3 (106-169)||(5866171-5866231)
chr3 (106-169)||(5876770-5876830)
chr3 (106-169)||(20720813-20720873)
chr3 (98-169)||(932362-932431)
chr3 (107-169)||(13373141-13373200)
chr3 (107-169)||(13394329-13394388)
chr3 (95-135)||(19307370-19307410)
[»] scaffold0040 (2 HSPs)
scaffold0040 (96-222)||(8206-8331)
scaffold0040 (109-150)||(8307-8348)
[»] chr5 (11 HSPs)
chr5 (117-215)||(19642401-19642498)
chr5 (95-216)||(12860201-12860321)
chr5 (107-223)||(20689715-20689830)
chr5 (327-384)||(6038175-6038232)
chr5 (108-187)||(18325858-18325935)
chr5 (154-197)||(17241263-17241306)
chr5 (157-196)||(19903197-19903236)
chr5 (162-223)||(36740718-36740780)
chr5 (161-223)||(22185618-22185681)
chr5 (154-192)||(17241212-17241250)
chr5 (123-151)||(26783829-26783857)
[»] chr1 (16 HSPs)
chr1 (107-223)||(16533978-16534093)
chr1 (107-192)||(35895685-35895768)
chr1 (112-197)||(11104934-11105017)
chr1 (107-223)||(43283023-43283138)
chr1 (154-223)||(14969054-14969123)
chr1 (98-216)||(9558639-9558755)
chr1 (156-223)||(15440366-15440433)
chr1 (94-223)||(20758438-20758566)
chr1 (95-215)||(19965691-19965809)
chr1 (107-192)||(31587344-31587428)
chr1 (117-168)||(19019590-19019639)
chr1 (111-151)||(22639779-22639819)
chr1 (107-151)||(8698352-8698396)
chr1 (156-223)||(17089004-17089072)
chr1 (99-147)||(17497094-17497142)
chr1 (107-147)||(26703071-26703111)
[»] chr7 (17 HSPs)
chr7 (107-223)||(5075762-5075877)
chr7 (109-223)||(23799950-23800062)
chr7 (160-206)||(8259036-8259082)
chr7 (95-150)||(9802687-9802742)
chr7 (96-169)||(17891760-17891832)
chr7 (95-169)||(602275-602346)
chr7 (107-150)||(11572819-11572862)
chr7 (95-150)||(19141856-19141911)
chr7 (95-150)||(20741255-20741310)
chr7 (107-150)||(23125437-23125480)
chr7 (107-190)||(4448769-4448851)
chr7 (109-150)||(15304135-15304176)
chr7 (106-169)||(24734437-24734497)
chr7 (106-169)||(24744384-24744444)
chr7 (106-169)||(26390652-26390712)
chr7 (106-169)||(26401294-26401354)
chr7 (95-135)||(9063570-9063610)
[»] chr6 (11 HSPs)
chr6 (99-223)||(15586187-15586310)
chr6 (95-223)||(30701770-30701897)
chr6 (160-223)||(6561360-6561424)
chr6 (111-224)||(11130468-11130580)
chr6 (107-150)||(14923822-14923865)
chr6 (95-169)||(7751691-7751762)
chr6 (95-169)||(14070635-14070707)
chr6 (168-197)||(21946559-21946588)
chr6 (95-169)||(27384103-27384173)
chr6 (95-169)||(27474487-27474557)
chr6 (95-169)||(27503985-27504055)
[»] chr2 (16 HSPs)
chr2 (107-206)||(22268297-22268395)
chr2 (112-197)||(13112811-13112894)
chr2 (109-223)||(24109869-24109982)
chr2 (156-223)||(26704204-26704271)
chr2 (95-149)||(16587529-16587583)
chr2 (107-151)||(14794394-14794438)
chr2 (154-197)||(33013963-33014007)
chr2 (95-145)||(22312294-22312344)
chr2 (107-149)||(22774032-22774074)
chr2 (106-169)||(11395666-11395726)
chr2 (106-169)||(11405982-11406042)
chr2 (169-222)||(27760777-27760830)
chr2 (95-150)||(16934039-16934095)
chr2 (107-169)||(29243897-29243956)
chr2 (107-169)||(34790711-34790770)
chr2 (107-169)||(34804854-34804913)
[»] chr8 (14 HSPs)
chr8 (96-216)||(29772085-29772205)
chr8 (111-216)||(29757936-29758040)
chr8 (135-222)||(18528392-18528478)
chr8 (94-212)||(29231423-29231537)
chr8 (112-222)||(28801203-28801311)
chr8 (107-192)||(10649866-10649950)
chr8 (107-223)||(33925896-33926013)
chr8 (107-150)||(1210364-1210407)
chr8 (109-150)||(24498726-24498767)
chr8 (107-169)||(15781219-15781278)
chr8 (107-169)||(15791808-15791867)
chr8 (107-151)||(16206753-16206797)
chr8 (123-151)||(17442471-17442499)
chr8 (97-149)||(22167521-22167573)
[»] scaffold1190 (1 HSPs)
scaffold1190 (95-191)||(841-936)
[»] scaffold0010 (1 HSPs)
scaffold0010 (154-223)||(135732-135801)
[»] scaffold0758 (1 HSPs)
scaffold0758 (107-150)||(3768-3811)
[»] scaffold0022 (1 HSPs)
scaffold0022 (94-135)||(158652-158693)
[»] scaffold0002 (1 HSPs)
scaffold0002 (107-148)||(111866-111907)
[»] scaffold0103 (1 HSPs)
scaffold0103 (95-150)||(16181-16237)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 19325592 - 19325207
Alignment:
Q  8 ccatgtgacccacggggagcaaaagctcgtgtcttatatggttaagggtctagtcttaactttatcnnnnnnncttctcctcattgtcaagagactttca 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||    
T  19325592 ccatgtgacccacggggagcaaaagctcttgtcttatatggttaagggtctagtcttaactttatctttttttcttctcatcattgtcaagagactttca 19325493  T
Q  108 atgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattggtttatttta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19325492 atgctcaatcacacaagaaagagacttcaaatgctcaagcacaatcaagaaagagagttctacaatctaacttaatcaaataaaagattggtttatttta 19325393  T
Q  208 cacttgataaacaatctaacttacaaattgtattatcagaggctgaaagcgacccttcctctgaagacgaaaaattggtcaaaggcttctgatgctgacg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||     
T  19325392 cacttgataaacaatctaacttacaaattgtattatcagaggctgaaagcgacccttcctctgaagacgaaaaactggtcagaggcttctgatgctgact 19325293  T
Q  308 tggctttatagtctt-------tctgagtcttcagaccttcagatgcttggcctcttcagagtctgtttcaaatcttcagcttccc 386  Q
    |||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19325292 tggctttatattcttgatatcctctgagtcttcagaccttcagatgcttggcctcttcagagtctgtttcaaatcttcagcttccc 19325207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 20243600 - 20243667
Alignment:
Q  156 gaaagagacttct-acaatctaacttaatcaaataaaagattggtttattttacacttgataaacaat 222  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||| |||||    
T  20243600 gaaagagacttcttacaatctaacttaatcaaataaaagattgtttggttttacacttgatatacaat 20243667  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 12235821 - 12235942
Alignment:
Q  96 aagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagat 195  Q
    |||||||||  |||| ||||||| |||||||||||||||| ||||| ||||||||        | | |||||||||||||||||||||||||||||||||    
T  12235821 aagagacttcaaatgatcaatcaaacaagaaagagacttccaatgcgcaagcacac-------aaatacttctacaatctaacttaatcaaataaaagat 12235913  T
Q  196 tg-gtttattttacacttgataaacaatc 223  Q
    ||  | || ||||||||||||| ||||||    
T  12235914 tgtatgtaatttacacttgatatacaatc 12235942  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 9266785 - 9266841
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaa 151  Q
    ||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||    
T  9266785 caagagactttcaatactcaagcacacaagcaagagacttcatatgctcaagcacaa 9266841  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 15522029 - 15521967
Alignment:
Q  154 aagaaagagacttctacaatctaacttaatcaaataaaagattggttta-ttttacacttgat 215  Q
    |||||||| |||| |||||||||||||||||||||||||||||| || | |||||||||||||    
T  15522029 aagaaagaaacttttacaatctaacttaatcaaataaaagattgtttaagttttacacttgat 15521967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 5718827 - 5718745
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaag 193  Q
    ||||||| | ||||||||||||||||| ||||||||| ||||| |  |||||| |||| || |||||||||||||||||| ||||    
T  5718827 tgctcaaacgcacaagaaagagacttctaatgctcaatcacaact--gaaagacacttatataatctaacttaatcaaattaaag 5718745  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 46342521 - 46342630
Alignment:
Q  113 caatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattggt-ttattttacact 211  Q
    ||||| ||||||||||||||||  | ||||||| ||||   |||||||| | ||||| ||||||||||||||||||||| ||||| |  | |||||||||    
T  46342521 caatcgcacaagaaagagacttatattgctcaatcacac--aagaaagaaatttctaaaatctaacttaatcaaataaaggattgttgattttttacact 46342618  T
Q  212 tgataaacaatc 223  Q
    ||||| ||||||    
T  46342619 tgatatacaatc 46342630  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 46979101 - 46979180
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaata 189  Q
    |||||||||||| |||||| ||||||    ||||||| ||||| | | |||||||||||||||||||||||||||||||||    
T  46979101 tgctcaatcacataagaaatagactttttctgctcaatcacaactga-aaagagacttctacaatctaacttaatcaaata 46979180  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 11861799 - 11861883
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagat 195  Q
    ||||||||||||||| |||  |||||  |||||| || ||||| |||  |||||||||||||||||||| ||||||| |||||||||    
T  11861799 tgctcaatcacacaataaaatgacttttaatgcttaatcacaactaa--aagagacttctacaatctaatttaatcagataaaagat 11861883  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 12790921 - 12790999
Alignment:
Q  117 cacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattg 197  Q
    |||||||||||||||||||   | ||||| ||||| |  |||||| ||||||||||||||||||||||| |||||| ||||    
T  12790921 cacacaagaaagagacttcctctactcaatcacaaat--gaaagaaacttctacaatctaacttaatcatataaaaaattg 12790999  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 13064037 - 13063948
Alignment:
Q  126 aagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaagattggtttattttacacttgata 216  Q
    |||||||||| ||||||||| ||||| |  |||| |||||||| ||||||||||||||| | |||||| |||| ||  ||||||||||||||    
T  13064037 aagagacttctaatgctcaatcacaact--gaaaaagacttctcacaatctaacttaataagataaaacattgtttggttttacacttgata 13063948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 24619175 - 24619231
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttc 167  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||  ||| ||||||||||    
T  24619175 tgctcaagcacacaagcaagagactttaaatgctcaagcacaa--aagcaagagacttc 24619231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 13977757 - 13977716
Alignment:
Q  156 gaaagagacttctacaatctaacttaatcaaataaaagattg 197  Q
    |||| ||||||||||||| |||||||||||||||||| ||||    
T  13977757 gaaaaagacttctacaatttaacttaatcaaataaaaaattg 13977716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 55745793 - 55745733
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  55745793 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 55745733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 55756404 - 55756344
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  55756404 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 55756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 12235804 - 12235840
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaa 145  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  12235804 tgctcaagcacacaagaaagagacttcaaatgatcaa 12235840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 13066977 - 13066937
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcac 149  Q
    ||||||| |||||||| |||||||||| |||||||||||||    
T  13066977 tgctcaagcacacaagtaagagacttcgaatgctcaagcac 13066937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 14154601 - 14154545
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaa 151  Q
    |||||||||| | ||||||||  ||||||  |||||||||| |||||||||||||||    
T  14154601 caagagacttcctatgctcaagaacacaatcaagagacttctaatgctcaagcacaa 14154545  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 15736285 - 15736382
Alignment:
Q  117 cacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaagattggtttattttacacttgat 215  Q
    |||||||| |||||||||| |||||| || ||||| | |  ||||||||||| ||| |||||||||||||||| ||  |||| ||  |||||||||||||    
T  15736285 cacacaagcaagagacttctaatgcttaatcacaactta--aagagacttctcacattctaacttaatcaaatcaacaattgtttggttttacacttgat 15736382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 18394031 - 18394075
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||||||  ||||||| |||||||||||||| ||||||||||    
T  18394031 caatgctcaagaacacaagcaagagacttcaaatactcaagcaca 18394075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 32491446 - 32491406
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagc 147  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  32491446 aatgctcaagcacacaagcaagagacttcaaatactcaagc 32491406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 56034108 - 56034149
Alignment:
Q  126 aagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    ||||||||||||||||||||||||||||  | ||||||||||||    
T  56034108 aagagacttcaaatgctcaagcacaatt--gcaagagacttcta 56034149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 95 - 223
Target Start/End: Original strand, 19264203 - 19264328
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaaga 194  Q
    |||||||||| | |||||||| || ||||||| |||||||| | | ||||| ||||   |||||||||||||||||||||||||||||||||||||||||    
T  19264203 caagagacttcctatgctcaaccatacaagaa-gagacttctatttctcaatcacac--aagaaagagacttctacaatctaacttaatcaaataaaaga 19264299  T
Q  195 ttggtttattttacacttgataaacaatc 223  Q
    ||| || ||||||||||| ||| ||||||    
T  19264300 ttgtttgattttacacttaatatacaatc 19264328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 4507721 - 4507820
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaaga 194  Q
    ||||||||||| ||||||| |||  |||||||||||||||| ||||||||| |||| |  || ||||||||||||||||| |||||||||||||||||||    
T  4507721 caagagactttaaatgctcgatcgtacaagaaagagacttccaatgctcaaacacact--agtaagagacttctacaatcgaacttaatcaaataaaaga 4507818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 31779237 - 31779349
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattggtttattttac 208  Q
    |||| |||||||||||||||||||||    ||||||| || ||||  ||||||||||||| |||||||||||||| |||||||| |||  |   ||||||    
T  31779237 tgcttaatcacacaagaaagagactttttctgctcaatcataatt--gaaagagacttctgcaatctaacttaattaaataaaatattattgggttttac 31779334  T
Q  209 acttgataaacaatc 223  Q
    |||||||| ||||||    
T  31779335 acttgatatacaatc 31779349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 8109325 - 8109433
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaagattggtttattt 205  Q
    ||||||||| |||| ||| |||| ||||| |||||| || || || |  ||||||||||| | ||||||||| ||||||||||||||||||| ||  |||    
T  8109325 aatgctcaagcacataagtaagaaacttctaatgctaaatcataaat--gaaagagactttttacaatctaaattaatcaaataaaagattgtttggttt 8109422  T
Q  206 tacacttgata 216  Q
    |||||||||||    
T  8109423 tacacttgata 8109433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 7921335 - 7921292
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||    
T  7921335 aatgctcaagcacacaagcaagagacttcatatgctcaagcaca 7921292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 12756091 - 12756036
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||| ||||||||||||||||||   |||||||||||| |||||| |||||||    
T  12756091 caagagattttcaatgctcaatcacaattgaaagagacttccaatgcttaagcaca 12756036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 13931454 - 13931497
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||    
T  13931454 aatgctcaagcacacaagcaagagacttcaaatactcaagcaca 13931497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 5866231 - 5866171
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  5866231 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 5866171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 5876830 - 5876770
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  5876830 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 5876770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 20720813 - 20720873
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  20720813 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 20720873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 932362 - 932431
Alignment:
Q  98 gagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||  ||| |||||||||||||| |||||| |||  ||||||||||||||  ||| ||||||||||||    
T  932362 gagacttcaaatactcaatcacacaagcaagagatttcttatgctcaagcacaa--aagcaagagacttcta 932431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 13373200 - 13373141
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  13373200 aatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 13373141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 13394388 - 13394329
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  13394388 aatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 13394329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 19307410 - 19307370
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttc 135  Q
    ||||||||||||||||||||||||||   ||||||||||||    
T  19307410 caagagactttcaatgctcaatcacaactgaaagagacttc 19307370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 8331 - 8206
Alignment:
Q  96 aagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagat 195  Q
    ||||||||| |||||||||| |||||||| ||||| |||| |||||||||||| |   |||||||||||||||||| |||||| ||||||||||||||||    
T  8331 aagagacttccaatgctcaagcacacaagcaagaggcttccaatgctcaagcatac--aagaaagagacttctacattctaacctaatcaaataaaagat 8234  T
Q  196 tggtt-tattttacacttgataaacaat 222  Q
    || ||   |||||||||||||| |||||    
T  8233 tgtttggcttttacacttgatatacaat 8206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 8348 - 8307
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    |||| ||||| |||||||||||||||| ||||||||||||||    
T  8348 tgcttaatcaaacaagaaagagacttccaatgctcaagcaca 8307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 19642498 - 19642401
Alignment:
Q  117 cacacaagaaagagactt-caaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattggtttattttacacttgat 215  Q
    |||||||| ||||| ||| ||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||    
T  19642498 cacacaagtaagaggctttcaaatgctcaatcacaatt--gaaagagacttctacaatctaacttaatcaaataaaagattatttgattttacacttgat 19642401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 12860321 - 12860201
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagact-tcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaag 193  Q
    |||||||||| ||||| |||| |||||||| ||||  || |||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||    
T  12860321 caagagacttccaatgttcaagcacacaagcaagatgctctcaaatgctcaatcacaact--gaaagagacttctacaatctaacttaatcaaataaaag 12860224  T
Q  194 attggtttattttacacttgata 216  Q
    | || || |||||| ||||||||    
T  12860223 actgtttgattttatacttgata 12860201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 20689715 - 20689830
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaagattggtttattt 205  Q
    ||||||||| |||||||| |||||||||| |||||  || || || |  ||||||||||||| |||||| |||||||||||||||||||||| || ||||    
T  20689715 aatgctcaagcacacaagcaagagacttctaatgcctaatcataact--gaaagagacttctcacaatcaaacttaatcaaataaaagattgtttgattt 20689812  T
Q  206 tacacttgataaacaatc 223  Q
    ||||||||||| ||||||    
T  20689813 tacacttgatatacaatc 20689830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 6038175 - 6038232
Alignment:
Q  327 agtcttcagaccttcagatgcttggcctcttcagagtctgtttcaaatcttcagcttc 384  Q
    |||||||||||||||||||||||| ||| |||| ||| |||| |||||||||||||||    
T  6038175 agtcttcagaccttcagatgcttgaccttttcaaagtgtgttccaaatcttcagcttc 6038232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 18325935 - 18325858
Alignment:
Q  108 atgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaa 187  Q
    ||||||| |||||||||||||||||||| |||| |||||||||   ||  |||| ||||| |||||||||||||||||||    
T  18325935 atgctcattcacacaagaaagagacttccaatgttcaagcaca--caaacaagatacttccacaatctaacttaatcaaa 18325858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 17241263 - 17241306
Alignment:
Q  154 aagaaagagacttctacaatctaacttaatcaaataaaagattg 197  Q
    |||||| |||||||||||||||||||||||| ||||||||||||    
T  17241263 aagaaatagacttctacaatctaacttaatcgaataaaagattg 17241306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 19903197 - 19903236
Alignment:
Q  157 aaagagacttctacaatctaacttaatcaaataaaagatt 196  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  19903197 aaagagacttctacaatttaacttaatcaaataaaagatt 19903236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 36740780 - 36740718
Alignment:
Q  162 gacttctacaatctaacttaatcaaataaaagattggtt-tattttacacttgataaacaatc 223  Q
    |||||||||||||||||||| ||||||||||||||| ||   |||||||||||||| ||||||    
T  36740780 gacttctacaatctaacttagtcaaataaaagattgtttgggttttacacttgatatacaatc 36740718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 22185618 - 22185681
Alignment:
Q  161 agacttctacaatctaacttaatcaaataaaagattggttta-ttttacacttgataaacaatc 223  Q
    |||| |||| ||||||||||||||||||||||||||| |  | |||||||||||||| ||||||    
T  22185618 agacatctataatctaacttaatcaaataaaagattgttagatttttacacttgatatacaatc 22185681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 17241212 - 17241250
Alignment:
Q  154 aagaaagagacttctacaatctaacttaatcaaataaaa 192  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  17241212 aagaaatagacttctacaatctaacttaatcgaataaaa 17241250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 26783829 - 26783857
Alignment:
Q  123 agaaagagacttcaaatgctcaagcacaa 151  Q
    |||||||||||||||||||||||||||||    
T  26783829 agaaagagacttcaaatgctcaagcacaa 26783857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 16533978 - 16534093
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattggtt-tattt 205  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||  ||  |||| |||||||||||||||||||||||||||||| |||  || | |||    
T  16533978 aatgctcaatcacacgagaaaaagacttccaatgctcaagcacaa--aaacaagaaacttctacaatctaacttaatcaaataaaaaattatttgtgttt 16534075  T
Q  206 tacacttgataaacaatc 223  Q
    ||||||||||| ||||||    
T  16534076 tacacttgatatacaatc 16534093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 35895685 - 35895768
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaa 192  Q
    |||| |||||||||||||||||||||||| ||||||||||||||   ||| |||||||||||||||||||| ||||||||||||||    
T  35895685 aatggtcaatcacacaagaaagagacttccaatgctcaagcaca--caagcaagagacttctacaatctaaattaatcaaataaaa 35895768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 11104934 - 11105017
Alignment:
Q  112 tcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattg 197  Q
    ||||||||||||| ||||||||||   ||||||| |||||||  |||||||| |||||||||| ||||| ||||||||||||||||    
T  11104934 tcaatcacacaaggaagagacttcctttgctcaatcacaatt--gaaagagatttctacaatcaaactttatcaaataaaagattg 11105017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 43283138 - 43283023
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaagattggtttattt 205  Q
    ||||||||| ||| |||| || ||||||| ||||||||| ||||| |  |||||||| |||| |||||||||||| |||||||||||||||| ||  |||    
T  43283138 aatgctcaaacacgcaagtaaaagacttctaatgctcaatcacaact--gaaagagagttcttacaatctaacttgatcaaataaaagattgtttggttt 43283041  T
Q  206 tacacttgataaacaatc 223  Q
    ||||||| ||| ||||||    
T  43283040 tacactttatatacaatc 43283023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 14969123 - 14969054
Alignment:
Q  154 aagaaagagacttctacaatctaacttaatcaaataaaagattggtttattttacacttgataaacaatc 223  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| ||  ||| |||||||||| ||||||    
T  14969123 aagaaagatactactacaatctaacttaatcaaataaaagattgtttggtttcacacttgatatacaatc 14969054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 216
Target Start/End: Complemental strand, 9558755 - 9558639
Alignment:
Q  98 gagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattg 197  Q
    |||||||||  |||||||| |||||||||| |||| |  | ||||||| || |   |||||||| | ||||||||||||||| ||| |||||||||||||    
T  9558755 gagactttctttgctcaataacacaagaaaaagacctatattgctcaatcaaac--aagaaagaaatttctacaatctaactgaattaaataaaagattg 9558658  T
Q  198 gtttattttacacttgata 216  Q
     || |||||||||||||||    
T  9558657 tttgattttacacttgata 9558639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 15440366 - 15440433
Alignment:
Q  156 gaaagagacttctacaatctaacttaatcaaataaaagattggtttattttacacttgataaacaatc 223  Q
    |||||||| ||||||||||||||| |||||||||||| |||| ||  |||||||||||||| ||||||    
T  15440366 gaaagagaattctacaatctaactaaatcaaataaaaaattgtttagttttacacttgatatacaatc 15440433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 20758438 - 20758566
Alignment:
Q  94 tcaagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaa 192  Q
    |||||| |||| ||||| |||| |||||||| |||||||||  |||| |||| | ||| |  ||||||||||||| ||||| || | |||||||||||||    
T  20758438 tcaagaaacttccaatgttcaagcacacaagcaagagacttataatgttcaatcgcaact--gaaagagacttctcacaatatatcgtaatcaaataaaa 20758535  T
Q  193 gattggtttattttacacttgataaacaatc 223  Q
     |||| || ||||||||||||||| ||||||    
T  20758536 aattgtttgattttacacttgatatacaatc 20758566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 19965809 - 19965691
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaag 193  Q
    |||||| ||| |||||||||| |||  ||| | |||||||| ||||||||| ||||| |||  ||||||||| | |||||||||||||||||||||||||    
T  19965809 caagagtcttccaatgctcaagcact-aagcaggagacttctaatgctcaatcacaactaa--aagagacttatcacaatctaacttaatcaaataaaag 19965713  T
Q  194 attggtttattttacacttgat 215  Q
    |||| ||   ||||||||||||    
T  19965712 attgtttggatttacacttgat 19965691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 31587428 - 31587344
Alignment:
Q  107 aatgctcaatcacacaagaaagagactt-caaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaa 192  Q
    |||||||||  ||||||| ||| ||||| |||||||||||  ||||||||  |||| ||||||| ||||||||||||||||||||||    
T  31587428 aatgctcaaatacacaagcaagggactttcaaatgctcaattacaattaa--aagaaacttctataatctaacttaatcaaataaaa 31587344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 19019639 - 19019590
Alignment:
Q  117 cacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct 168  Q
    ||||||||||||||||||||||||||||| ||||| |  |||||||||||||    
T  19019639 cacacaagaaagagacttcaaatgctcaatcacaact--gaaagagacttct 19019590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 22639779 - 22639819
Alignment:
Q  111 ctcaatcacacaagaaagagacttcaaatgctcaagcacaa 151  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  22639779 ctcaagcacacaagcaagagacttcaaatgctcaagcacaa 22639819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 8698352 - 8698396
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaa 151  Q
    |||| |||| ||||||||||| ||||||||||| |||||||||||    
T  8698352 aatgttcaagcacacaagaaaaagacttcaaatactcaagcacaa 8698396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 17089072 - 17089004
Alignment:
Q  156 gaaagagacttct-acaatctaacttaatcaaataaaagattggtttattttacacttgataaacaatc 223  Q
    ||||||||||| | |||||||||||||||||||||||| |||  ||  ||||| |||||||| ||||||    
T  17089072 gaaagagacttattacaatctaacttaatcaaataaaatattttttggttttaaacttgatatacaatc 17089004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 17497142 - 17497094
Alignment:
Q  99 agactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagc 147  Q
    |||||||||||||||||||||    |||||||||||| |||||||||||    
T  17497142 agactttcaatgctcaatcactactgaaagagacttctaatgctcaagc 17497094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 26703071 - 26703111
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagc 147  Q
    ||||||||| |||||||| |||||||||||||| |||||||    
T  26703071 aatgctcaaacacacaagcaagagacttcaaatactcaagc 26703111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 5075877 - 5075762
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaagattggtttattt 205  Q
    |||| |||| |||||||| |||||||||| ||||||||| ||||| |||  ||||||||||| |||||||||||| |||||||||||||||| || ||||    
T  5075877 aatgttcaaacacacaagcaagagacttctaatgctcaatcacaactaa--aagagacttctcacaatctaacttgatcaaataaaagattgtttgattt 5075780  T
Q  206 tacacttgataaacaatc 223  Q
    ||||| ||| | ||||||    
T  5075779 tacacctgaaatacaatc 5075762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 23799950 - 23800062
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattggtttattttac 208  Q
    ||||||||||||||||||| ||||||  ||||||||| ||||   ||| || | |||| || ||||||||||||||||||||||||||| ||  ||||||    
T  23799950 tgctcaatcacacaagaaatagactttcaatgctcaaacacac--aagtaaaaaacttatataatctaacttaatcaaataaaagattgtttggttttac 23800047  T
Q  209 acttgataaacaatc 223  Q
    | |||||| ||||||    
T  23800048 atttgatatacaatc 23800062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 8259036 - 8259082
Alignment:
Q  160 gagacttctacaatctaacttaatcaaataaaagattggtttatttt 206  Q
    |||||||||||||||||||||||||||||||||||||| || |||||    
T  8259036 gagacttctacaatctaacttaatcaaataaaagattgtttgatttt 8259082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 9802687 - 9802742
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    |||||||||| | |||||||| |||||||| ||||||||||| |||||||||||||    
T  9802687 caagagacttcctatgctcaagcacacaagcaagagacttcacatgctcaagcaca 9802742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 17891832 - 17891760
Alignment:
Q  96 aagagactttcaa-tgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    ||||||||||||| ||||||| ||||||||||||||||||  ||||||||| ||||| |  ||||||||||||||    
T  17891832 aagagactttcaaatgctcaaacacacaagaaagagactttcaatgctcaatcacaact--gaaagagacttcta 17891760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 602275 - 602346
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| | |||||||| |||||||| ||||||||||| ||||||||||||  | ||| ||||||||||||    
T  602275 caagagactt-ctatgctcaaacacacaagtaagagacttcagatgctcaagcac--taaagcaagagacttcta 602346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 11572862 - 11572819
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||    
T  11572862 aatgctcaagcacacaagcaagagacttcaaatactcaagcaca 11572819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 19141856 - 19141911
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||||||| |||||||||||| |   |||||||||||| ||||||||||||||    
T  19141856 caagagacttttaatgctcaatcataactgaaagagacttccaatgctcaagcaca 19141911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 20741255 - 20741310
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||||||| |||||||||||| |   |||||||||||| ||||||||||||||    
T  20741255 caagagacttttaatgctcaatcataactgaaagagacttccaatgctcaagcaca 20741310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 23125437 - 23125480
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||    
T  23125437 aatgctcaagcacacaagcaagagacttcaaatactcaagcaca 23125480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 4448769 - 4448851
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataa 190  Q
    ||||||||| || ||||| |||||||||| | ||||||| |||||||  ||| |||| |||| |||| |||||||||||||||||    
T  4448769 aatgctcaaccaaacaaggaagagacttctattgctcaatcacaatt--gaatgagaattcttacaacctaacttaatcaaataa 4448851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 15304135 - 15304176
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||| |||||||| ||||||||||| |||||||||||||    
T  15304135 tgctcaagcacacaagcaagagacttcatatgctcaagcaca 15304176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 24734437 - 24734497
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  24734437 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 24734497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 24744384 - 24744444
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  24744384 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 24744444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 26390712 - 26390652
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  26390712 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 26390652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 26401354 - 26401294
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  26401354 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 26401294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 9063570 - 9063610
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttc 135  Q
    |||||||||||| ||||||||||||| | ||||||||||||    
T  9063570 caagagactttcgatgctcaatcacaaatgaaagagacttc 9063610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 15586187 - 15586310
Alignment:
Q  99 agactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta-caatctaacttaatcaaataaaagattg 197  Q
    |||||| ||||||| || |||||||| |||||||||| ||| |||||| |||| |  |||||||||||||  | |||||||||||||||||||||| |||    
T  15586187 agacttacaatgctaaagcacacaagcaagagacttctaattctcaagtacaact--gaaagagacttctcgctatctaacttaatcaaataaaaggttg 15586284  T
Q  198 gtttattttacacttgataaacaatc 223  Q
     || ||||||||||||||| ||||||    
T  15586285 tttgattttacacttgatatacaatc 15586310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 30701897 - 30701770
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaaga 194  Q
    |||||||||| |  || ||||||||||| ||||||||||| |||| ||||| ||||| |||  | |||||||||||||||||||||||| | ||||||||    
T  30701897 caagagacttcctttgatcaatcacacatgaaagagactttaaattctcaatcacaactaa--atgagacttctacaatctaacttaattagataaaaga 30701800  T
Q  195 ttggttta-ttttacacttgataaacaatc 223  Q
     || || | |||||||||||||| ||||||    
T  30701799 ctgtttgatttttacacttgatatacaatc 30701770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 6561424 - 6561360
Alignment:
Q  160 gagacttct-acaatctaacttaatcaaataaaagattggtttattttacacttgataaacaatc 223  Q
    ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||    
T  6561424 gagacttcttacaatctaacttaatcaaataaaagattgtttgattttacacttgatatacaatc 6561360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 11130468 - 11130580
Alignment:
Q  111 ctcaatcacacaagaaagagacttc-aaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattggtttattttaca 209  Q
    ||||| |||||||| |||||||||| |||||||||| ||||  |  ||||||||| ||||||| |||||||||||||||||||||||| ||  |||||||    
T  11130468 ctcaaacacacaagtaagagacttccaaatgctcaatcacagct--gaaagagacgtctacaagctaacttaatcaaataaaagattgtttggttttaca 11130565  T
Q  210 cttgataaacaatct 224  Q
      ||||| |||||||    
T  11130566 aatgatatacaatct 11130580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 14923865 - 14923822
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  14923865 aatgctcaatcacacaagaaagagacttcaaatattcaagcaca 14923822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 7751762 - 7751691
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||||| |||  ||| |||||||||| |||||||||||||||  ||| ||||||||||||    
T  7751762 caagagacttccaatgctcaagcact-aagcaagagacttctaatgctcaagcacaa--aagcaagagacttcta 7751691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 14070707 - 14070635
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| | |||||||| |||||||| ||||||||||  ||||||||||||  | ||| ||||||||||||    
T  14070707 caagagacttcctatgctcaagcacacaagcaagagacttcttatgctcaagcac--taaagcaagagacttcta 14070635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 197
Target Start/End: Complemental strand, 21946588 - 21946559
Alignment:
Q  168 tacaatctaacttaatcaaataaaagattg 197  Q
    ||||||||||||||||||||||||||||||    
T  21946588 tacaatctaacttaatcaaataaaagattg 21946559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 27384103 - 27384173
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||||| |||  ||| |||||||||| |||||||||||||   |||| ||||||||||||    
T  27384103 caagagacttccaatgctcaagcact-aagcaagagacttctaatgctcaagcac---taagcaagagacttcta 27384173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 27474487 - 27474557
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||||| |||  ||| |||||||||| |||||||||||||   |||| ||||||||||||    
T  27474487 caagagacttccaatgctcaagcact-aagcaagagacttctaatgctcaagcac---taagcaagagacttcta 27474557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 27503985 - 27504055
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||||| |||  ||| |||||||||| |||||||||||||   |||| ||||||||||||    
T  27503985 caagagacttccaatgctcaagcact-aagcaagagacttctaatgctcaagcac---taagcaagagacttcta 27504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 22268297 - 22268395
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttc-aaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattggtttattt 205  Q
    |||||| || |||||||| |||||| ||| |||||||||| || ||||  |||||||||||||||||||||||||||||||||||||||||| || ||||    
T  22268297 aatgcttaagcacacaagcaagagatttccaaatgctcaatcaaaatt--gaaagagacttctacaatctaacttaatcaaataaaagattgtttgattt 22268394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 13112894 - 13112811
Alignment:
Q  112 tcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattg 197  Q
    |||||||||||||||||||||||  ||| |||||||||||  ||| |||||||||||||| |  ||||||||||||||||||||||    
T  13112894 tcaatcacacaagaaagagactttcaatactcaagcacaa--aagtaagagacttctacagtgcaacttaatcaaataaaagattg 13112811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 24109982 - 24109869
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta-caatctaacttaatcaaataaaagattggtttatttta 207  Q
    |||| |||||||||||||||| ||||| |||| ||||  ||||||  |||||||| || || |||||||||||||||| |||||| |||| || ||||||    
T  24109982 tgcttaatcacacaagaaagaaacttctaatgttcaattacaatt--gaaagagaattttaacaatctaacttaatcatataaaatattgtttaatttta 24109885  T
Q  208 cacttgataaacaatc 223  Q
    ||||||||| ||||||    
T  24109884 cacttgatatacaatc 24109869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 26704204 - 26704271
Alignment:
Q  156 gaaagagacttctacaatctaacttaatcaaataaaagattggtttattttacacttgataaacaatc 223  Q
    |||||||||||||| |||||||||||||||||||||| |||| ||  ||||| |||||||| ||||||    
T  26704204 gaaagagacttctataatctaacttaatcaaataaaatattgtttggttttaaacttgatatacaatc 26704271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 16587583 - 16587529
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcac 149  Q
    |||||||||| ||||||||||||||| | |||| ||||||| |||||||||||||    
T  16587583 caagagacttccaatgctcaatcacaaatgaaacagacttccaatgctcaagcac 16587529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 14794438 - 14794394
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaa 151  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||    
T  14794438 aatgctcaagcacacaagtaagagacttcaaatactcaagcacaa 14794394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 33014007 - 33013963
Alignment:
Q  154 aagaaagagacttctacaatctaactt-aatcaaataaaagattg 197  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||    
T  33014007 aagaaagagacttctacaatctaacttaaatcaaataaaacattg 33013963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 22312344 - 22312294
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaa 145  Q
    ||||||||||  ||||||||| |||||| || |||||||||||||||||||    
T  22312344 caagagacttctaatgctcaagcacacaggatagagacttcaaatgctcaa 22312294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 22774032 - 22774074
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcac 149  Q
    ||||||||| |||||| |||||||||||| |||||||||||||    
T  22774032 aatgctcaagcacacaggaaagagacttccaatgctcaagcac 22774074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 11395726 - 11395666
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  11395726 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 11395666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 11406042 - 11405982
Alignment:
Q  106 caatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    |||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  11406042 caatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 11405982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 27760830 - 27760777
Alignment:
Q  169 acaatctaacttaatcaaataaaagattggtttattttacacttgataaacaat 222  Q
    |||||||||| |||||| ||||||||||| ||  |||||||||||||| |||||    
T  27760830 acaatctaacctaatcatataaaagattgtttggttttacacttgatatacaat 27760777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 16934095 - 16934039
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagactt-caaatgctcaagcaca 150  Q
    |||||||||| | |||||||| ||||||| |||||||||| ||||||||||| ||||    
T  16934095 caagagacttcctatgctcaagcacacaaaaaagagacttccaaatgctcaatcaca 16934039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 29243897 - 29243956
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    ||||||||| |||||| | ||||| |||| |||||||||||||   |||||||||||||||||    
T  29243897 aatgctcaagcacacacgcaagagtcttccaatgctcaagcac---taagaaagagacttcta 29243956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 34790770 - 34790711
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  34790770 aatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 34790711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 34804913 - 34804854
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  34804913 aatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 34804854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 29772205 - 29772085
Alignment:
Q  96 aagagactttcaa-tgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaag 193  Q
    ||||||||||||| ||||||| ||| |||| |||| ||||| ||||||||| ||||||| |||  ||||||||| ||||||||||| |||||||||||||    
T  29772205 aagagactttcaaatgctcaaacacccaagcaagatacttctaatgctcaatcacaattgaga--gagacttcttacaatctaactcaatcaaataaaag 29772108  T
Q  194 attggtttattttacacttgata 216  Q
    |||  ||  ||||||||||||||    
T  29772107 attatttggttttacacttgata 29772085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 29758040 - 29757936
Alignment:
Q  111 ctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaagattggtttattttaca 209  Q
    ||||| |||||||| |||||||||| ||||||||| ||||||| |||  ||||||||| ||||||||||||||||| |||||| |||  ||  |||||||    
T  29758040 ctcaagcacacaagcaagagacttctaatgctcaatcacaattgaga--gagacttcttacaatctaacttaatcagataaaatattatttggttttaca 29757943  T
Q  210 cttgata 216  Q
    |||||||    
T  29757942 cttgata 29757936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 18528478 - 18528392
Alignment:
Q  135 caaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaagattggttta-ttttacacttgataaacaat 222  Q
    ||||||||||| ||||| |  ||||||||||||||||| | |||||||||||||||||||||| || | ||||| |||||||| |||||    
T  18528478 caaatgctcaatcacaact--gaaagagacttctacaaaccaacttaatcaaataaaagattgtttgatttttatacttgatatacaat 18528392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 29231423 - 29231537
Alignment:
Q  94 tcaagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctacaatctaacttaatcaaataaaag 193  Q
    |||||| |||||||||| ||||||||||| |||||||  ||  ||||| ||| |||||    | |||||||||||| ||||| || ||||||||||||||    
T  29231423 tcaagatactttcaatgttcaatcacacatgaaagagtgtttcaatgcacaaacacaa----gcaagagacttctaaaatctgacctaatcaaataaaag 29231518  T
Q  194 attggtttattttacactt 212  Q
    |||| ||  ||||||||||    
T  29231519 attgtttggttttacactt 29231537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 28801311 - 28801203
Alignment:
Q  112 tcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagac-ttctacaatctaacttaatcaaataaaagattggtttattttacac 210  Q
    ||||||||||||| |||||||||  ||||||||| |||||||  |||||| || || |||||| |||||||||||||| |||||||| ||  ||||||||    
T  28801311 tcaatcacacaagcaagagacttttaatgctcaatcacaatt--gaaagaaactttttacaatttaacttaatcaaat-aaagattgtttggttttacac 28801215  T
Q  211 ttgataaacaat 222  Q
    || ||| |||||    
T  28801214 ttcatatacaat 28801203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 10649950 - 10649866
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct-acaatctaacttaatcaaataaaa 192  Q
    |||||| || |||| ||| |||||||||| ||||||||| ||||| |  ||||||||||||| ||||||||||||||| ||||||||    
T  10649950 aatgcttaagcacaaaagcaagagacttctaatgctcaatcacaact--gaaagagacttcttacaatctaacttaataaaataaaa 10649866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 33926013 - 33925896
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttct---acaatctaacttaatcaaataaaagattggtttat 203  Q
    |||||| || |||||||| ||||||||| || ||||||| ||||| | | ||| ||||||||   | |||| |||||||||||||||||||||| || ||    
T  33926013 aatgcttaagcacacaagcaagagactttaa-tgctcaatcacaactgaaaaa-agacttctcgcaaaatccaacttaatcaaataaaagattgtttgat 33925916  T
Q  204 tttacacttgataaacaatc 223  Q
    ||||||||| ||| ||||||    
T  33925915 tttacacttaatatacaatc 33925896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 1210407 - 1210364
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||    
T  1210407 aatgctcaagcacacaagcaagagacttcaaatactcaagcaca 1210364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 24498767 - 24498726
Alignment:
Q  109 tgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    ||||||| |||||||| |||| ||||||||||||||||||||    
T  24498767 tgctcaagcacacaagcaagatacttcaaatgctcaagcaca 24498726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 15781278 - 15781219
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  15781278 aatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 15781219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 15791867 - 15791808
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttcta 169  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||   |||| ||||||||||||    
T  15791867 aatgctcaagcacacaagcaagagtcttccaatgctcaagcac---taagcaagagacttcta 15791808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 16206753 - 16206797
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcacaa 151  Q
    ||||||||| ||||  || ||||||||||||||||||||||||||    
T  16206753 aatgctcaagcacaacagcaagagacttcaaatgctcaagcacaa 16206797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 17442499 - 17442471
Alignment:
Q  123 agaaagagacttcaaatgctcaagcacaa 151  Q
    |||||||||||||||||||||||||||||    
T  17442499 agaaagagacttcaaatgctcaagcacaa 17442471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 22167573 - 22167521
Alignment:
Q  97 agagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcac 149  Q
    |||||||| |||||||||| |||  ||| |||||||||| |||||||||||||    
T  22167573 agagacttccaatgctcaagcactaaagcaagagacttctaatgctcaagcac 22167521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 841 - 936
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagacttcaaatgctcaagcacaattaagaaagagacttctac-aatctaacttaatcaaataaa 191  Q
    ||||| |||||||||| |||| |||||||| |||| ||||  ||||||||| ||||| |  ||||||||||||||  |||||||||||||||||||||    
T  841 caagatactttcaatgttcaagcacacaagcaagatacttataatgctcaatcacaact--gaaagagacttctaataatctaacttaatcaaataaa 936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 135732 - 135801
Alignment:
Q  154 aagaaagagacttctacaatctaacttaatcaaataaaagattggtttattttacacttgataaacaatc 223  Q
    |||| |||||||| |||||| ||||||||||||||||||||||  ||  |||||||||||||| ||||||    
T  135732 aagagagagacttttacaatttaacttaatcaaataaaagattatttagttttacacttgatatacaatc 135801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 3768 - 3811
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagcaca 150  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||    
T  3768 aatgctcaatcacacaagcaagagacttaaaatactcaagcaca 3811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 158652 - 158693
Alignment:
Q  94 tcaagagactttcaatgctcaatcacacaagaaagagacttc 135  Q
    ||||||||||| | |||||||| |||||||||||||||||||    
T  158652 tcaagagacttcctatgctcaagcacacaagaaagagacttc 158693  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 111866 - 111907
Alignment:
Q  107 aatgctcaatcacacaagaaagagacttcaaatgctcaagca 148  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  111866 aatgctcaagcacacaagtaagagacttcaaatactcaagca 111907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 16181 - 16237
Alignment:
Q  95 caagagactttcaatgctcaatcacacaagaaagagactt-caaatgctcaagcaca 150  Q
    |||||||||| | |||||||| ||||||| |||||||||| ||||||||||| ||||    
T  16181 caagagacttcctatgctcaagcacacaaaaaagagacttccaaatgctcaatcaca 16237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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