View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16860_high_1 (Length: 283)
Name: NF16860_high_1
Description: NF16860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16860_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 28666279 - 28666029
Alignment:
| Q |
18 |
gataaaataatcatatcataataaatgaatatttcaaactttgtgttgaaaatctaaaaacaaacacctcttcaatagagtcaaattttataggaaaaca |
117 |
Q |
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| T |
28666279 |
gataaaataatcatatcataataaatgaatatttcaaactttgtgttgaaaatctaaaaacaaacacctcttcaatagagtcaaattttataggaaaaca |
28666180 |
T |
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| Q |
118 |
ccaacctggaaaatctgtcaattactactagaacatctcacacaattcaaagtcatattaaatgcacctagtggaagcatgcaactgttaacaaccattg |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28666179 |
ccaacctggaaaatctgtcaattactagtagaacatctcacacaattcaaagtcatattaaatgcacctagtggaagcatacaactgttaacaaccattg |
28666080 |
T |
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| Q |
218 |
aacatgttcaattaatgtatgactttttgtaggtagttgaggatgatacat |
268 |
Q |
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| T |
28666079 |
aacatgttcaattaatgtatgactttttgtaggtagttgaggatgatacat |
28666029 |
T |
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