View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16860_low_2 (Length: 429)
Name: NF16860_low_2
Description: NF16860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16860_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 11183177 - 11183564
Alignment:
| Q |
1 |
gtaaaaactgatgatatctcatctaagagttactacaagaaatgaaagatacttagttttattaatatgatgacatataattatcaatagccatagatta |
100 |
Q |
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| T |
11183177 |
gtaaaaactgatgatatctcatctaagagttacaagaa-atatgaaagatacttagttttattaatatgatgacatataattatcaatagccatagatta |
11183275 |
T |
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| Q |
101 |
caaaaatagatcttacaaacacactgcattcaatagccatatattacaaaatatatcaccatatccagcacaagagaagggcccatgtatgttcccctag |
200 |
Q |
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| T |
11183276 |
caaaa-tagatcttacaaacacactgcattca--------------------atttcaccat--ccagcacaagagaagagcccatgtatgttcccctag |
11183352 |
T |
|
| Q |
201 |
aacacactctttattataggtacgtaggtacctttcttatgcaacttgtattaaattacttggtatgagctaacaataccatcttctgatgaatctttgg |
300 |
Q |
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| T |
11183353 |
aacacactctttattataggtaggtaggtacctttcttatgcaacttgtattaaattacttggtatgagctaacaataccatcttctgctgaatctttgg |
11183452 |
T |
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| Q |
301 |
tgactttggtagcaagactaacagtattaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcat |
400 |
Q |
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| T |
11183453 |
tgactttggtagcaagactaacagtattaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcat |
11183552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 224 - 412
Target Start/End: Original strand, 11190600 - 11190788
Alignment:
| Q |
224 |
gtaggtacctttcttatgcaacttgtattaaattacttggtatgagctaacaataccatcttctgatgaatctttggtgactttggtagcaagactaaca |
323 |
Q |
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| T |
11190600 |
gtagatacctttcttatgcaacttgtcttaaattacttagaatgagctaacaataccatcttctgatgaatctttggtgactttggtagcaagactaaca |
11190699 |
T |
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| Q |
324 |
gtattaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatcgaggccttaaa |
412 |
Q |
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| T |
11190700 |
gtattaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatggaggccttaaa |
11190788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 225 - 412
Target Start/End: Complemental strand, 11173185 - 11172995
Alignment:
| Q |
225 |
taggtacctttcttatgcaacttgtattaaattacttggtatgagctaacaataccatcttctgatgaatctttggtgactttggtagcaagactaacag |
324 |
Q |
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| T |
11173185 |
taggtacctttcttatgcaacttgtattaaattacttagtatgagctaacaataccatcctctgacgactctcttgtgacttttgtggcaaggccagaat |
11173086 |
T |
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| Q |
325 |
t---attaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcatcgaggccttaaa |
412 |
Q |
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| T |
11173085 |
ttccattaacaaagttacattgttttctaatttcaccttgagatccagttaacactttaattctactcattttaatcatcgaggccttaaa |
11172995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 11179173 - 11179109
Alignment:
| Q |
336 |
ttacagtgtgttctaacttcaccttgagttccagttaacactccaatattacccatcttaatcat |
400 |
Q |
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| T |
11179173 |
ttacattgtgttctaatttcaccttgagatccagttaaaactccaatattacccatttttatcat |
11179109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 11190478 - 11190527
Alignment:
| Q |
104 |
aaatagatcttacaaacacactgcattcaatagccatatattacaaaata |
153 |
Q |
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| T |
11190478 |
aaatagaacttacaaacacactgcattcagtagccatagattacaaaata |
11190527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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