View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16860_low_4 (Length: 261)
Name: NF16860_low_4
Description: NF16860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16860_low_4 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 10078531 - 10078786
Alignment:
| Q |
6 |
tggacatcatcatcaggcgcaacagtctgaagaacaattacagcagcaacagcagcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaa |
105 |
Q |
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| T |
10078531 |
tggacatcataatcaggcgcaacagtctgaagatcaattacagcagcaacaacagcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaa |
10078630 |
T |
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| Q |
106 |
gctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatcgaccaccacaagcaccattgttggac |
205 |
Q |
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| T |
10078631 |
gctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatcgaccaccacaagcaccattgttggac |
10078730 |
T |
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| Q |
206 |
ttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagc |
261 |
Q |
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| T |
10078731 |
ttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagc |
10078786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 261
Target Start/End: Complemental strand, 40776318 - 40776136
Alignment:
| Q |
76 |
aactcaaatggtgatcaaaactctgtgcaagctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctg |
175 |
Q |
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||||||||||| ||||||||| | |||||||||||| | |||||| | |||| | ||||||| |||| |||||||||| |||||| || || || | |
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| T |
40776318 |
aactcaaatggcgatcaaaacccagtgcaagctgcttccatgcaaattgcttccagcaatggtatggttagtgtaaatagttctgtcaactcggcgtccg |
40776219 |
T |
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| Q |
176 |
catcgaccaccacaagcaccattgttggacttctccaccagaactctatgaacgctagacagcaaaattcaatgaacaatgcaagc |
261 |
Q |
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| T |
40776218 |
catcaacaaccacaagcactattgttggacttctccaccaaaactctgtgaattctaga---caaaattcaatgaacaatgcaagc |
40776136 |
T |
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