View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16860_low_5 (Length: 247)
Name: NF16860_low_5
Description: NF16860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16860_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 15553809 - 15554040
Alignment:
| Q |
9 |
acatcatcaatattattgtaacaaattataatttaagaggctatttgtagtgcaggtaaaggttgttgttggatttctgaaacaacaatgtcaagaaatg |
108 |
Q |
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| T |
15553809 |
acatcatcaatattattgtaacaaattataatttaagaggctatttgtagtgcatgtaaaggttgttgttggatttctgaaacaacaatgtcaagaaatg |
15553908 |
T |
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| Q |
109 |
tttcagaggttgtttgtaggtttagttcaggttgagtgaggggagttcaccatgtcaatgttgagacaaattgtctaacacaaatgacgaacattgtgta |
208 |
Q |
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| T |
15553909 |
tttcagaggttgtttgtaggtttaattcaggttgagtgaggggagttcaccatgtcaacgttgagacaaattgtctaacacaaatgacgaacattgtgta |
15554008 |
T |
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| Q |
209 |
ggttgaaaagggttggatgaggatgatgatgt |
240 |
Q |
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| T |
15554009 |
ggttgaaaagggttggatgaggatgatgatgt |
15554040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 15649415 - 15649638
Alignment:
| Q |
9 |
acatcatcaatattattgtaacaaattataatttaagaggctatttgtagtgcaggtaaaggttgttgttggatttctgaaacaacaatgtcaagaaatg |
108 |
Q |
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|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
15649415 |
acatcatcaatattattgtaacgaattatagttaaagaggctatttgtagtgcaggtaaaggttgttgttggatttctgaaacaacaatgttaggaaatg |
15649514 |
T |
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| Q |
109 |
tttcagaggttgtttgtaggtttagttcaggttgagtgaggggagttcaccatgtcaatgttgagacaaattgtctaacacaaatgacgaacattgtgta |
208 |
Q |
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| T |
15649515 |
tttaagaggttgtttgtaggtttagttcaggttaagtgaggggatttcaccatgtaaatcttgagacaaattttctaacacaaatgacgaacattgtgta |
15649614 |
T |
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| Q |
209 |
ggttgaaaagggttggatgaggat |
232 |
Q |
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| T |
15649615 |
ggttggaaagggttggatgaggat |
15649638 |
T |
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Back To:
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