View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16861_low_1 (Length: 380)

Name: NF16861_low_1
Description: NF16861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16861_low_1
NF16861_low_1
[»] chr1 (8 HSPs)
chr1 (16-380)||(51807677-51808035)
chr1 (185-373)||(51803887-51804075)
chr1 (214-333)||(51772294-51772413)
chr1 (16-90)||(51772096-51772170)
chr1 (214-333)||(51780160-51780279)
chr1 (18-78)||(51803793-51803853)
chr1 (16-77)||(51779981-51780046)
chr1 (212-315)||(51761302-51761406)
[»] scaffold0710 (2 HSPs)
scaffold0710 (214-333)||(6802-6921)
scaffold0710 (16-77)||(6623-6688)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 380
Target Start/End: Original strand, 51807677 - 51808035
Alignment:
Q  16 ctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51807677 ctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaa 51807776  T
Q  116 accattttccatttctgtgtagtatctatatcagcttaactcctcttgcagttgctagttgagttgcgcgtatctaattctatttgcataactctgaaaa 215  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||      |||||||||||||| ||||||||||||||||||||||||||||||    
T  51807777 accattttccatttctgtgtagtatctatatcagctttactcctcttgc------tagttgagttgcgcatatctaattctatttgcataactctgaaaa 51807870  T
Q  216 atttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgttta 315  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51807871 atttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgttta 51807970  T
Q  316 cgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtattatctacccacc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  51807971 cgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcacagtgttatctatccacc 51808035  T

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Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 185 - 373
Target Start/End: Original strand, 51803887 - 51804075
Alignment:
Q  185 gtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaatt 284  Q
    |||||||||||| |||  |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  51803887 gtatctaattctctttatataactctgaaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaatt 51803986  T
Q  285 cttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtattatct 373  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  51803987 cttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgtgagagaaggagagaggctatcaaaagtttcgcagtgttatct 51804075  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 214 - 333
Target Start/End: Original strand, 51772294 - 51772413
Alignment:
Q  214 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 313  Q
    |||||||||| ||| || |||||||||| ||| ||||||| ||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51772294 aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt 51772393  T
Q  314 tacgcaatattttagtgtga 333  Q
    || ||  |||||||||||||    
T  51772394 tatgcggtattttagtgtga 51772413  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 51772096 - 51772170
Alignment:
Q  16 ctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcc 90  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  51772096 ctagaaaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttcc 51772170  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 333
Target Start/End: Original strand, 51780160 - 51780279
Alignment:
Q  214 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 313  Q
    |||||||| | ||| | ||||||||||| ||| ||||||||| |||||  ||||||||||||||| |||||||| || ||||||||||||| ||| | ||    
T  51780160 aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt 51780259  T
Q  314 tacgcaatattttagtgtga 333  Q
    || ||| |||||||||||||    
T  51780260 tatgcactattttagtgtga 51780279  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 51803793 - 51803853
Alignment:
Q  18 aggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagactt 78  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  51803793 aggaaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagactt 51803853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 51779981 - 51780046
Alignment:
Q  16 ctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact 77  Q
    ||||||||||||||||||||||||||| |||||||||||| |    ||||||||||||||||||||    
T  51779981 ctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact 51780046  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 51761302 - 51761406
Alignment:
Q  212 aaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagctta-ggggctcaaattcttcaaatgggtggagtggagaaagt 310  Q
    |||||||||||||||||| |||| |||||||||  |||||||||||||||  || ||   | ||||||| ||||||| || |||||| |||||||||| |    
T  51761302 aaaaatttcagtgagagtgggagaaaacatatcagaaacaataaagaggaagttaagtacagggggctcgaattcttgaagtgggtgaagtggagaaaat 51761401  T
Q  311 gttta 315  Q
    |||||    
T  51761402 gttta 51761406  T

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Target: scaffold0710 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 333
Target Start/End: Original strand, 6802 - 6921
Alignment:
Q  214 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 313  Q
    |||||||| | ||| | ||||||||||| ||| ||||||||| |||||  ||||||||||||||| |||||||| || ||||||||||||| ||| | ||    
T  6802 aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt 6901  T
Q  314 tacgcaatattttagtgtga 333  Q
    || ||| |||||||||||||    
T  6902 tatgcactattttagtgtga 6921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 6623 - 6688
Alignment:
Q  16 ctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact 77  Q
    ||||||||||||||||||||||||||| |||||||||||| |    ||||||||||||||||||||    
T  6623 ctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact 6688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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