View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16861_low_2 (Length: 235)
Name: NF16861_low_2
Description: NF16861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16861_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 6399580 - 6399789
Alignment:
| Q |
14 |
catttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaagtctatgaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399580 |
catttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaagtctatgaa |
6399679 |
T |
|
| Q |
114 |
gccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399680 |
gccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttcc |
6399779 |
T |
|
| Q |
214 |
agaataatct |
223 |
Q |
| |
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||| |||||| |
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| T |
6399780 |
agactaatct |
6399789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 6412922 - 6412713
Alignment:
| Q |
14 |
catttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaagtctatgaa |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412922 |
catttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaagtctatgaa |
6412823 |
T |
|
| Q |
114 |
gccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttcc |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412822 |
gccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttcc |
6412723 |
T |
|
| Q |
214 |
agaataatct |
223 |
Q |
| |
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||| |||||| |
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| T |
6412722 |
agactaatct |
6412713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 6410176 - 6409970
Alignment:
| Q |
14 |
catttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaagtctatgaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |
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| T |
6410176 |
catttatatcaaatacttgaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttccatgaactctttaaagtctatgaa |
6410077 |
T |
|
| Q |
114 |
gccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttcc |
213 |
Q |
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|
||||||||||||||||||||| | ||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6410076 |
gccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccc---caatccccttatccaaagattttgcagctgctttatactcttcc |
6409980 |
T |
|
| Q |
214 |
agaataatct |
223 |
Q |
| |
|
||| |||||| |
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|
| T |
6409979 |
agactaatct |
6409970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 6405258 - 6405396
Alignment:
| Q |
73 |
tctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataa |
172 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||| | || | | |
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| T |
6405258 |
tctccattgaacatttccataaactctctaaagtctatgaatccatctttgtcatagtccatggccttaaatgctttcactgcatcagtatccc---cta |
6405354 |
T |
|
| Q |
173 |
tccccttatccaaagcttttgcagctgctttatactcttcca |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6405355 |
cccccttatccaaagcttttgcagctgctttatactcttcca |
6405396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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