View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16862_high_1 (Length: 425)
Name: NF16862_high_1
Description: NF16862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16862_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 255 - 402
Target Start/End: Original strand, 25933413 - 25933560
Alignment:
| Q |
255 |
caagcaggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
354 |
Q |
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| T |
25933413 |
caagcaggtaattctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
25933512 |
T |
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| Q |
355 |
ttgactctgttgttgagggttgtgatggtgtctttcatactgcttcac |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25933513 |
ttgactctgttgttgagggttgtgatggtgtctttcatactgcttcac |
25933560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 255 - 402
Target Start/End: Original strand, 26100932 - 26101079
Alignment:
| Q |
255 |
caagcaggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttctt |
354 |
Q |
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||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26100932 |
caagcaggtaatcctaaaaaggttgaccacttgcttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcct |
26101031 |
T |
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| Q |
355 |
ttgactctgttgttgagggttgtgatggtgtctttcatactgcttcac |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26101032 |
ttgactctgttgttgagggttgtgatggtgtctttcatactgcttcac |
26101079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 25933161 - 25933329
Alignment:
| Q |
18 |
tatagggataatttcaattacaagcaatcgtagaaggatgatgagtggagaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatgg |
117 |
Q |
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| T |
25933161 |
tatagggataatttcaattacaagca---------ggatgatgagtggggaaggaaaagtggtgtgtgtgacaggtgctaatggttttattgcttcatgg |
25933251 |
T |
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| Q |
118 |
attgttaagtttctacttcaacgtggttacactgtcagagccactgttcgtcatccaagtcagtacttctttttcctt |
195 |
Q |
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| T |
25933252 |
attgttaagtttctccttcaatgtggttacactgtcagagcaactgttcgtcacccaagtcagtgcttctttctcctt |
25933329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 26100697 - 26100849
Alignment:
| Q |
56 |
tgatgagtggagaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcag |
155 |
Q |
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| T |
26100697 |
tgatgagtggggaaggaaaggtggtgtgtgtgacaggtgcttctggttttatagcttcatggattgtcaagttcctactccaacgtggttacactgtccg |
26100796 |
T |
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| Q |
156 |
agccactgttcgtcatccaagtcagtacttctttttccttcaaattctttctc |
208 |
Q |
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| T |
26100797 |
agccactgtccgtgacccaagtatgtgcatgtttttccttcaacttctttctc |
26100849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 273 - 412
Target Start/End: Original strand, 29548958 - 29549097
Alignment:
| Q |
273 |
aaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgttgttgagg |
372 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||| ||||| |||||| || | | |
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| T |
29548958 |
aaggttgatcacttgcttaaacttgatggtgcaaaggaaaggttgcaactctttaaggcagatttacttgaagaaggttcctttgattctgttattcaag |
29549057 |
T |
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| Q |
373 |
gttgtgatggtgtctttcatactgcttcactcgttcattt |
412 |
Q |
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| T |
29549058 |
gatgccatggtgtctttcatactgcttcacccgttcattt |
29549097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 55 - 195
Target Start/End: Original strand, 29548725 - 29548865
Alignment:
| Q |
55 |
atgatgagtggagaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtca |
154 |
Q |
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|||| |||||| ||||| ||||| |||||||| ||||||||| ||||| |||||||||||| |||| |||||||| || ||||||||||| ||||| | |
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| T |
29548725 |
atgaagagtggtgaaggtaaggttgtgtgtgtaacaggtgcttcaggtttcattgcttcatgggttgtcaagtttcttctccaacgtggttatactgtta |
29548824 |
T |
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| Q |
155 |
gagccactgttcgtcatccaagtcagtacttctttttcctt |
195 |
Q |
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| T |
29548825 |
gagccactgttcgtgaccctagtcagtgcttctttctcctt |
29548865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 29554904 - 29555019
Alignment:
| Q |
67 |
gaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgtggttacactgtcagagccactgttc |
166 |
Q |
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|||||||||||||| ||||| || |||||| |||| ||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
29554904 |
gaaggaaaggtggtttgtgtaactggtgcttcaggttatattgcttcatggcttgtcaaatttctccttcaacgtggttacactgttagagccactgttc |
29555003 |
T |
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| Q |
167 |
gtcatccaagtcagta |
182 |
Q |
| |
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|| |||||||| |||| |
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| T |
29555004 |
gtgatccaagttagta |
29555019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 260 - 402
Target Start/End: Original strand, 29555154 - 29555296
Alignment:
| Q |
260 |
aggtaatcctgaaaaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgac |
359 |
Q |
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|||||||||| | |||||||| || || |||||||||||||||| ||||| |||||||| ||||| ||||||||||| || ||||||||||| |||||| |
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| T |
29555154 |
aggtaatcctaataaggttgaccatttacttaaacttgatggtgctaaggaaaggttgcacctcttcaaggcagatctattagaagaaggttcatttgac |
29555253 |
T |
|
| Q |
360 |
tctgttgttgagggttgtgatggtgtctttcatactgcttcac |
402 |
Q |
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|||| || | |||||| ||||||| |||||||| ||||||| |
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| T |
29555254 |
catgttattcaaggttgtcatggtgtttttcataccgcttcac |
29555296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 29559120 - 29559194
Alignment:
| Q |
67 |
gaaggaaaggtggtgtgtgtgacaggtgctaatggttttattgcttcatggattgttaagtttctacttcaacgt |
141 |
Q |
| |
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||||||||||| |||||||| ||||||| | |||| ||||||||||||| ||||||||||||| || |||||| |
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| T |
29559120 |
gaaggaaaggttgtgtgtgtaacaggtggttcaggttatattgcttcatggcttgttaagtttcttctccaacgt |
29559194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 397
Target Start/End: Original strand, 87805 - 87929
Alignment:
| Q |
273 |
aaggttgatcacttggttaaacttgatggtgcaaaggagaggttgcaactctttaaggcagatctcttggaagaaggttcttttgactctgttgttgagg |
372 |
Q |
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|||||||| ||||||||||| ||||||||||| |||||||| |||||||| || |||||| |||| | ||||||||| | ||||| ||||||||| | | |
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| T |
87805 |
aaggttgaccacttggttaagcttgatggtgctaaggagagattgcaactgttcaaggcaaatctacttgaagaaggtgcctttgattctgttgttcaag |
87904 |
T |
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| Q |
373 |
gttgtgatggtgtctttcatactgc |
397 |
Q |
| |
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| ||| ||||||||||||| ||||| |
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| T |
87905 |
gctgtcatggtgtctttcacactgc |
87929 |
T |
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