View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16862_high_1_N (Length: 351)
Name: NF16862_high_1_N
Description: NF16862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16862_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 48070106 - 48070443
Alignment:
| Q |
13 |
cagagacctatatatagaagcagaacaatgccatattcaggaccattagatggaagaatgcatgagcagaaaatggtcagcaataataaggcattgaagt |
112 |
Q |
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| T |
48070106 |
cagagacctatatatagaagcagaacaatgccatattcaggaccattagatggaagaatgcatgagcagaaaatggtgagcaataataaggcattgaagt |
48070205 |
T |
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| Q |
113 |
tatcaggaccaattgatggaagattgatgaatgagagaatgatgatttatactaatagaagtccattaagaagtagggctattgatggaagattcaccaa |
212 |
Q |
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| T |
48070206 |
tatcaggaccaattgatggaagattgatgaatgagagaatgatgatttatactaatagaagtccattaagaagtagggctattgatggaagattcaccaa |
48070305 |
T |
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| Q |
213 |
gagtccaatatctggacctttggatgcaaaaatcatgtttgagaatagaagtccaactattacaagggcttctgttgaaactgatagcccaatgggttat |
312 |
Q |
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| T |
48070306 |
gagtccaatatctggacctttggatgcaaaaatcatgtttgagaatagaagtccaactattacaagggcttctgttgaaactgatagcccaatgggttat |
48070405 |
T |
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| Q |
313 |
agtagtccttataataaacccaaaggtgattttgattt |
350 |
Q |
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| T |
48070406 |
agtagtccttataataaacccaaaggtgattttgattt |
48070443 |
T |
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