View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16863_low_1 (Length: 513)
Name: NF16863_low_1
Description: NF16863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16863_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 8 - 506
Target Start/End: Original strand, 15234241 - 15234738
Alignment:
| Q |
8 |
caacaatcatggtaacatgtagggagaggatactcaggagcaagactatattcaatggaaacaattatcacatttgcttgtgatgcaaaggttttcaaat |
107 |
Q |
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| T |
15234241 |
caacaatcatggtaacatgtagggagaggatactcaggagcaagactatattcaatggaaacaattatcacatttgcttgtgatgcaaaggttttcaaat |
15234340 |
T |
|
| Q |
108 |
ggtcatggtacttcttcgagaatgttgattcgaacatgaaaacgcggccatgaaaataaaccaagattggaaatttggaaagtgggtttgtgatttttgg |
207 |
Q |
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| T |
15234341 |
gttcatggtacttcttcgagaatgttgattcgaacatgaaaacgccgccatgaaaataaaccaagattggaaatttggaaagtgggtttgtgatttttgg |
15234440 |
T |
|
| Q |
208 |
aaggtaaatacgagatgaaattgtggggttgtgtgggatttgtatatctttggatgaaattccagtgttagggtcgttgagagatggaggagcaaatggg |
307 |
Q |
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| T |
15234441 |
aaggtaaatacgagatgaaattgtggggttgtgtgggatttgtatatctttggatgaaattccagtgttagggtcgttgagagatggaggagcaaatggg |
15234540 |
T |
|
| Q |
308 |
gattgttttggtctttctattgaaccgtcgctaaagatacgaaggatatttcccatttcggtaactatttctttagtgatggtttttggtgtcgtgggtg |
407 |
Q |
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| T |
15234541 |
gattgttttggtctttctattgaaccgtcgctaaagatacgaaggatatttcccatttcggtaactatttctttagtgatggtttttggtgtcgtgggtg |
15234640 |
T |
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| Q |
408 |
ttgtggaagccatttcaattgaggatgtgaagagtgtttgaaaaggagtttcaatgtaaaatatgagggttaatttggtgttttgattggtgatgatgt |
506 |
Q |
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| T |
15234641 |
ttgtggaagccatttcaattgaggatgtgaagagtgtttg-aaaggagtttcaatgtaaaatatgagggttaatttggtgttttgattggtgatgatgt |
15234738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 443
Target Start/End: Complemental strand, 17473282 - 17472847
Alignment:
| Q |
8 |
caacaatcatggtaacatgtagggagaggatactcaggagcaagactatattcaatggaaacaattatcacatttgcttgtgatgcaaaggttttcaaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
17473282 |
caacaatcatggtaacatgtagggagaggatactcaggagcaagtctatattcaattgaaacaacaatcacatttgcttgtgatgcaaagattttcaaat |
17473183 |
T |
|
| Q |
108 |
ggtcatggtacttcttcgagaatgttgattcgaacatgaaaacgcggccatgaaaataaaccaagattggaaatttggaaagtgggtttgtgatttttgg |
207 |
Q |
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| T |
17473182 |
ggtcatggtacaactttgagaatgcggattcgaagatgaaagcgccgccatgaaaataaaccaggattggaaattttgaaggtgggtttgtgatttttag |
17473083 |
T |
|
| Q |
208 |
aaggtaaatacgagatgaaattgtggggttgtgtgggatttgtatatctttggatgaaattccagtgttagggtcgttgagagatggaggagcaaatggg |
307 |
Q |
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|||||| || ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||||||||| | ||||| |
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| T |
17473082 |
aaggtatatgcgagatgaaattgtggggttgtgtgggatttcaatgtctttggatgaaagtccagtgtttgggtcattgagagatggaggaaccaatggt |
17472983 |
T |
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| Q |
308 |
gattgttttggtctttctattgaaccgtcgctaaagatacgaaggatatttcccatttcggtaactatttctttagtgatggtttttggtgtcgtgggtg |
407 |
Q |
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|||||| ||||||||| | ||||||||||||||||||||||| || |||| | |||||||||||||||||||| || ||||| |||||| || ||| |
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| T |
17472982 |
gattgtgatggtctttccactgaaccgtcgctaaagatacgaatgaatgttccaaattcggtaactatttctttagcgacggtttctggtgtggtttgtg |
17472883 |
T |
|
| Q |
408 |
ttgtggaagccatttcaattgaggatgtgaagagtg |
443 |
Q |
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|| ||||||||||||||| |||||||| ||||||| |
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| T |
17472882 |
ttttggaagccatttcaactgaggatgaaaagagtg |
17472847 |
T |
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