View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16863_low_2 (Length: 395)
Name: NF16863_low_2
Description: NF16863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16863_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 39533435 - 39533794
Alignment:
| Q |
18 |
acaagttgggtataggcatgtgtatccgtaacgaagaggggcgattcatacgcgcaaaaacaatgtggttttccccgatttgctcggtagatgttggtga |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
39533435 |
acaagttgggtataggtatgtgtatccgtaacgaagaggggcgattcatacgcgcaaaaacaatgtggttttccccggtttgctcagtagatgttggtga |
39533534 |
T |
|
| Q |
118 |
agttttgggactgttttatgctattcgatggattcatgagccaagacttcaaaatgttgattttgaggttgattcgaaatgtgtagcattttattttaac |
217 |
Q |
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|| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
39533535 |
agctttgggactgttttatgctattcgatgggttcatgagctaagacttcaaaatgttgattttgaggttgattcgaaacgtgtagcaaattattttaac |
39533634 |
T |
|
| Q |
218 |
cgaagcaacagagatatcactgagtttggaaacattatggatagtaatattcattattgtcattccaatttagaaaactctcatattgagtttattagga |
317 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
39533635 |
cgaagcaatagagctatcactgagtttggaaacattatggatagtaatattcattattgccattccaatttagaaaactctcatgttgagtttattagga |
39533734 |
T |
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| Q |
318 |
ggcaggtgaatgcggttgtccataaattagcaaaggcatccacttccttgattagcttcc |
377 |
Q |
| |
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|||| | ||||| ||||| ||| ||||||||||||||||||||||||||| |||||||| |
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|
| T |
39533735 |
ggcaagcgaatgtggttgcccacgaattagcaaaggcatccacttccttgactagcttcc |
39533794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 25133138 - 25133209
Alignment:
| Q |
250 |
cattatggatagtaatattcattattgtcattccaatttagaaaactctcatattgagtttattaggaggca |
321 |
Q |
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|||||||||||||| ||| || | ||| ||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
25133138 |
cattatggatagtagtatccaattatgtaattcctatttaataaactctcatattgagtttattaggaggca |
25133209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 28214617 - 28214259
Alignment:
| Q |
18 |
acaagttgggtataggcatgtgtatccgtaacgaagaggggcgattcatacgcgcaaaaacaatgtggttttccccgatttgctcggtagatgttggtga |
117 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
28214617 |
acaagttgggtataggtatgtgtatctgtgacgaagaggggcgattca-acgcgcaaaaacaatgtggttttccccggtttgctcggtagatgttgatga |
28214519 |
T |
|
| Q |
118 |
agttttgggactgttttatgctattcgatggattcatgagccaagacttcaaaatgttgattttgaggttgattcgaaatgtgtagcattttattttaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
28214518 |
agttttgggactgttttatgctattcgatgggttcatgagctaagacttcaaaatgttgattttgaggttgattcgaaacgtgtagcagattattttaac |
28214419 |
T |
|
| Q |
218 |
cgaagcaacagagatatcactgagtttggaaacattatggatagtaatattcattattgtcattccaatttagaaaactctcatattgagtttattagga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
28214418 |
cgaagcaacagagatatcactgagtttgaaaacattatggataataatattcattattgccattccaatttagaaaactctcatgttgagtttattagga |
28214319 |
T |
|
| Q |
318 |
ggcaggtgaatgcggttgtccataaattagcaaaggcatccacttccttgattagcttcc |
377 |
Q |
| |
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| || ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |
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| T |
28214318 |
gacaagtgaatgcggttgcccatgaattagcaaaggcatccacttccttgactagcttcc |
28214259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 11420419 - 11420351
Alignment:
| Q |
292 |
aaactctcatattgagtttattaggaggcaggtgaatgcggttgtccataaattagcaaaggcatccac |
360 |
Q |
| |
|
|||||||||| | ||||||||||||||||| || |||| |||||| ||| |||||| |||||| |||| |
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|
| T |
11420419 |
aaactctcatgtcgagtttattaggaggcaagtaaatgaggttgttcatgaattagttaaggcagccac |
11420351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 69 - 377
Target Start/End: Original strand, 29704434 - 29704743
Alignment:
| Q |
69 |
gcgcaaaaacaatgtggttttccccgatttgctcggtagatgttggtgaagttttgggactgttttatgctattcgatggattcatgagccaagacttca |
168 |
Q |
| |
|
|||||||||||||||||||||| | |||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
29704434 |
gcgcaaaaacaatgtggttttctcagatttgttcgatagatgttggtgaagctttgcgactgttttatgctattcgatgggttcatgagctaagacttca |
29704533 |
T |
|
| Q |
169 |
aaatgttgattttgaggttgattcgaaatgtgtagcattttattttaaccgaagcaacagagatatcac-tgagtttggaaacattatggatagtaatat |
267 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29704534 |
aaatgttgattttgaggttgattcgaaacgtgtagcagattattttaaccgaatcaatagagatatcacttgagtttggaaacattatggatagtaatat |
29704633 |
T |
|
| Q |
268 |
tcattattgtcattccaatttagaaaactctcatattgagtttattaggaggcaggtgaatgcggttgtccataaattagcaaaggcatccacttccttg |
367 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||| |||||||||||||| | ||||| ||||| |||| |||||||||||||||||||||||||| |
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|
| T |
29704634 |
tcattattgtcattccaatttaaaaaactctcatgttgaatttattaggaggcaagcgaatgtggttgcccatgaattagcaaaggcatccacttccttg |
29704733 |
T |
|
| Q |
368 |
attagcttcc |
377 |
Q |
| |
|
| |||||||| |
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| T |
29704734 |
actagcttcc |
29704743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 18748336 - 18748571
Alignment:
| Q |
18 |
acaagttgggtataggcatgtgtatccgtaacgaagaggggcgattcatacgcgcaaaaacaatgtggttttccccgatttgctcggtagatgttggtga |
117 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| || |
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|
| T |
18748336 |
acaagttggatataggtatgtgtatccgtaacgaagagggacgatttatacgcgcaaaaacaatgtggtttttcccggtttgctcggtagatgttgggga |
18748435 |
T |
|
| Q |
118 |
agttttgggactgttttatgctattcgatggattcatgagccaagacttcaaaatgttgattttgaggttgattcgaaatgtgtagcattttattttaac |
217 |
Q |
| |
|
|| ||||||||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
18748436 |
agctttgggactgttttatgctattcaatgggttcatgaactaagacttcaaaatgttgattttgaggttgattcgaaacgtgtagcagattattttaac |
18748535 |
T |
|
| Q |
218 |
cgaagcaacagagatatcactgagtttggaaacatt |
253 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
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|
| T |
18748536 |
cgaagcaacagagataacactgagtttggaaacatt |
18748571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 216 - 368
Target Start/End: Complemental strand, 41162674 - 41162522
Alignment:
| Q |
216 |
accgaagcaacagagatatcactgagtttggaaacattatggatagtaatattcattattgtcattccaatttagaaaactctcatattgagtttattag |
315 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41162674 |
accgaagcaatagagatatcattgagtttggaaacattatggatagtaatattcattattgtcattccaatttagaaaactctcatattgagtttattag |
41162575 |
T |
|
| Q |
316 |
gaggcaggtgaatgcggttgtccataaattagcaaaggcatccacttccttga |
368 |
Q |
| |
|
|||| | | | ||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
41162574 |
gaggtaagcgtatgcggttgcccataaattagcaaaggcatccactttcttga |
41162522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 41162722 - 41162678
Alignment:
| Q |
216 |
accgaagcaacagagatatcactgagtttggaaacattatggata |
260 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
41162722 |
accgaagcaatagagatatcattgagtttggaaacattatggata |
41162678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 375
Target Start/End: Complemental strand, 8445696 - 8445629
Alignment:
| Q |
308 |
tttattaggaggcaggtgaatgcggttgtccataaattagcaaaggcatccacttccttgattagctt |
375 |
Q |
| |
|
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8445696 |
tttattaggaggcaagcgaatgcggttgcccataaattagcaaaggcatccacttccttgactagctt |
8445629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 321
Target Start/End: Complemental strand, 52468067 - 52467923
Alignment:
| Q |
177 |
attttgaggttgattcgaaatgtgtagcattttattttaaccgaagcaacagagatatcactgagtttggaaacattatggatagtaatattcattattg |
276 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||| ||||||||||| |||||| | ||||||||||| |||| |||||||||||||||| ||||| |
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|
| T |
52468067 |
attttgaggtagattcgaagcgtgtagcagattatttcaaccgaagcaatgaagatattattgagtttggaatcattgtggatagtaatattcagtattg |
52467968 |
T |
|
| Q |
277 |
tcattccaatttagaaaactctcatattgagtttattaggaggca |
321 |
Q |
| |
|
| ||||||| ||||||||| | ||||||||||| ||||| |
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|
| T |
52467967 |
cttcttaaatttagccaactctcatgtagagtttattagaaggca |
52467923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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