View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16864_low_1 (Length: 424)

Name: NF16864_low_1
Description: NF16864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16864_low_1
NF16864_low_1
[»] chr6 (11 HSPs)
chr6 (1-424)||(6462245-6462668)
chr6 (1-424)||(6496004-6496427)
chr6 (2-305)||(6473586-6473889)
chr6 (2-230)||(6464665-6464893)
chr6 (2-225)||(6525703-6525926)
chr6 (2-270)||(6504809-6505080)
chr6 (1-150)||(6521271-6521420)
chr6 (62-263)||(6527585-6527786)
chr6 (22-312)||(6456725-6457015)
chr6 (63-150)||(6516811-6516898)
chr6 (73-158)||(1842444-1842529)
[»] chr7 (2 HSPs)
chr7 (109-225)||(46382859-46382975)
chr7 (1-114)||(9666042-9666155)
[»] chr4 (1 HSPs)
chr4 (1-114)||(13537066-13537179)
[»] chr1 (1 HSPs)
chr1 (182-263)||(35244581-35244662)


Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 6462668 - 6462245
Alignment:
Q  1 cttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttgcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6462668 cttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttgcttc 6462569  T
Q  101 acatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaactccaagtctacattctctatattcaggtggagcaaaccaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6462568 acatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaa 6462469  T
Q  201 gtccactttctctcttgttagaccatagaaatcccattatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccacca 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6462468 gtccactttctctcttgttagaccatagaaatcccatgatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccacca 6462369  T
Q  301 catttgagctgctttaattccaaaagctaatagtgtcgatccattgataaaaaggtctgcgtcgttatatgccaaacccatcagtgctgctgaataatat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6462368 catttgagctgctttaattccaaaagctaatagtgtcgatccattgataaaaaggtctgcgtcgttatatgccaaacccatcagtgctgctgaataatat 6462269  T
Q  401 gcatttgcagcttggcttgtgctc 424  Q
    ||||||||||||||||||||||||    
T  6462268 gcatttgcagcttggcttgtgctc 6462245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 6496004 - 6496427
Alignment:
Q  1 cttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttgcttc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6496004 cttatcataaattccttgtaaggcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgcccattcaacaagttgcttc 6496103  T
Q  101 acatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaactccaagtctacattctctatattcaggtggagcaaaccaaa 200  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  6496104 acatattcgacatcagagaacaatacttcagaaataggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaa 6496203  T
Q  201 gtccactttctctcttgttagaccatagaaatcccattatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccacca 300  Q
    ||||||||||||||||||| ||||||||||||||||| ||||  ||| |||||||||| ||||| |||||||||||  ||||||||||||||||||||||    
T  6496204 gtccactttctctcttgttggaccatagaaatcccatgatccgattcgcttttgtaaattcttcggcatatagttttcctccttcttttatatgccacca 6496303  T
Q  301 catttgagctgctttaattccaaaagctaatagtgtcgatccattgataaaaaggtctgcgtcgttatatgccaaacccatcagtgctgctgaataatat 400  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||  ||||||||||||||||||||| || ||||||||||||| |||||| |||||||||    
T  6496304 catttgagccgctttaattccaaaggctaaaagtgtcgatccaaggataaaaaggtctgcgtcgttgtacgccaaacccatcaatgctgccgaataatat 6496403  T
Q  401 gcatttgcagcttggcttgtgctc 424  Q
    |||||||||||||| |||||||||    
T  6496404 gcatttgcagcttgacttgtgctc 6496427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 2 - 305
Target Start/End: Complemental strand, 6473889 - 6473586
Alignment:
Q  2 ttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttgcttca 101  Q
    ||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| || || || |||||| |||||||||| || ||||||| |||||    
T  6473889 ttatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaacaccttccctatttaaagcaagcaatgtccactccacaagttccttca 6473790  T
Q  102 catattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaactccaagtctacattctctatattcaggtggagcaaaccaaag 201  Q
    |||| |||||||| || ||||| |||||||||||||||| |||||||| |||||||| |||||| ||||||||| |  || |||  ||||||||||| |     
T  6473789 cataatcaacatctgaaaacaaaacttcagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataa 6473690  T
Q  202 tccactttctctcttgttagaccatagaaatcccattatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccaccac 301  Q
    |||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||  |||| || || ||||||||||||| ||||||||||    
T  6473689 tccactgtctctcttgttagaccatagaactcccatcatcctattctcttttgtaaaatcttcctcatagagattctctccttcttttacatgccaccac 6473590  T
Q  302 attt 305  Q
    ||||    
T  6473589 attt 6473586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 6464665 - 6464893
Alignment:
Q  2 ttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttgcttca 101  Q
    |||||||||| |||||  || ||||| ||||||||||||||||||||| ||||||| || || |||||||||||||||||||| || ||||||| |||||    
T  6464665 ttatcataaactccttccaaggcatagacaaaccctttccatccttctccaacaccttccctattcaaagcaggcaatgtccactccacaagttccttca 6464764  T
Q  102 catattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaactccaagtctacattctctatattcaggtggagcaaaccaaag 201  Q
    || | |||||||  || || || | ||||||||| |||| |||||||||||||||||  ||||| ||||||||| |  ||||||| ||||||||||| |     
T  6464765 caaaatcaacatttgaaaataagaattcagaaattggaagcaatggtaagagctgaatcccaagcctacattctttccattcaggaggagcaaaccataa 6464864  T
Q  202 tccactttctctcttgttagaccatagaa 230  Q
    |||||| ||||||||||||| ||| ||||    
T  6464865 tccactgtctctcttgttagcccaaagaa 6464893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 6525703 - 6525926
Alignment:
Q  2 ttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttgcttca 101  Q
    ||||||||||| ||||| || ||||| |||||||| ||||| || |||||||||||||| ||||| |||||||| |||||||| || ||||||  |||||    
T  6525703 ttatcataaatcccttgcaaggcataaacaaaccccttccaaccctcttcaacaccatccctttttaaagcaggtaatgtccactccacaagtcccttca 6525802  T
Q  102 catattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaactccaagtctacattctctatattcaggtggagcaaaccaaag 201  Q
    ||||   ||||||||||||||| ||||||||||| |||| |||||||||||||||||  ||||| ||||||||| |  |||||| |||| ||||||| |     
T  6525803 catacataacatcagagaacaagacttcagaaattggaagcaatggtaagagctgaatcccaagcctacattctttccattcagctggaccaaaccataa 6525902  T
Q  202 tccactttctctcttgttagacca 225  Q
     ||||| ||||| ||||| |||||    
T  6525903 accactgtctcttttgttcgacca 6525926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 270
Target Start/End: Original strand, 6504809 - 6505080
Alignment:
Q  2 ttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatct---cttttcaaagcaggcaatgtccattcaacaagttgct 98  Q
    ||||||||||||||||  || | |||||  || || |||||||||||| |||||||| ||   || |||||||||||||||||||| |||||||| |  |    
T  6504809 ttatcataaattccttccaatgaatataagaatcccttccatccttctccaacaccaccttccctattcaaagcaggcaatgtccactcaacaagatctt 6504908  T
Q  99 tcacatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaactccaagtctacattctctatattcaggtggagcaaacca 198  Q
    | ||||| ||||||||||| |||||  |||||||||||||| |||||||||  ||||||| |||    |||  ||||||  |||||||||||||||||||    
T  6504909 taacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtataagctgaattcctgtcctagcttctctccattcaggtggagcaaacca 6505008  T
Q  199 aagtccactttctctcttgttagaccatagaaatcccattatcctgttctcttttgtaaactcttctgcata 270  Q
    ||||||||| ||||| || |||  ||| | || ||||| ||| || ||||||||||||||||||||| ||||    
T  6505009 aagtccactatctcttttattattccacaaaactcccactattctattctcttttgtaaactcttcttcata 6505080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 6521420 - 6521271
Alignment:
Q  1 cttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttgcttc 100  Q
    ||||||||||||||| | ||||||||| ||||| || |||||||||||  |||||||||| |||| |||| |||||||   |||||| ||||  | ||||    
T  6521420 cttatcataaattccctttaaagcatacacaaatcccttccatccttcaccaacaccatcactttccaaatcaggcaacacccattccacaacatccttc 6521321  T
Q  101 acatattcaacatcagagaacaatacttcagaaataggaaccaatggtaa 150  Q
    ||| ||||||||||||| ||||| | ||| |||||||||| |||||||||    
T  6521320 acaaattcaacatcagaaaacaacatttctgaaataggaagcaatggtaa 6521271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 62 - 263
Target Start/End: Original strand, 6527585 - 6527786
Alignment:
Q  62 cttttcaaagcaggcaatgtccattcaacaagttgcttcacatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaactc 161  Q
    ||||| || ||||| |||||||||||||| |||| ||||||||| |   ||||||| ||||| ||||||||||||||   ||| ||||| |  ||||| |    
T  6527585 ctttttaaggcaggtaatgtccattcaactagttccttcacatactttgcatcagaaaacaaaacttcagaaataggcgacaagggtaaaacttgaacac 6527684  T
Q  162 caagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttagaccatagaaatcccattatcctgttctcttttgtaaactc 261  Q
    |||| ||   ||||||  ||||||  ||||||||| | | |||||| ||||||||||||||||||| || |||||| ||||| ||||| |||||||| ||    
T  6527685 caagccttgcttctctccattcagccggagcaaacgacaatccactgtctctcttgttagaccataaaactcccatgatcctattctcctttgtaaaatc 6527784  T
Q  262 tt 263  Q
    ||    
T  6527785 tt 6527786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 6456725 - 6457015
Alignment:
Q  22 agcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttgcttcacatattcaacatcagagaac 121  Q
    |||||||| ||| |||||||| |||||  ||||||| |  || ||||||  ||| ||||||||||| ||||| | ||| |||||  ||||||| || |||    
T  6456725 agcatatataaaacctttccacccttcaccaacacctttcctattcaaattaggtaatgtccattccacaagctcctttacataaccaacatccgaaaac 6456824  T
Q  122 aatacttcagaaataggaaccaatggtaagagctgaactccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttag 221  Q
    ||| | || |  ||||| | ||| ||||| |  ||||  || || ||||| |||||  ||| ||  || |||||||| |||||||| |||||||| ||||    
T  6456825 aatgcctcggtgataggcaacaaaggtaaaacttgaatacctagcctacactctctccattgagcaggcgcaaaccatagtccactatctctcttattag 6456924  T
Q  222 accatagaaatcccattatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccaccacatttgagctgc 312  Q
    |||| | ||  | || ||   |||||||||| | ||| ||||| ||||| |||||||||||  ||||||||||||||||||||||||||||    
T  6456925 accaaacaacactcactactttgttctctttggaaaattcttcagcataaagtttatctccgccttttatatgccaccacatttgagctgc 6457015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 6516898 - 6516811
Alignment:
Q  63 ttttcaaagcaggcaatgtccattcaacaagttgcttcacatattcaacatcagagaacaatacttcagaaataggaaccaatggtaa 150  Q
    |||| |||| |||||||| ||| ||||||||||  |||||||| ||||||||||| || || ||||||||||| |||  |||||||||    
T  6516898 ttttgaaaggaggcaatgcccactcaacaagttctttcacataatcaacatcagaaaataaaacttcagaaattggacacaatggtaa 6516811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 1842529 - 1842444
Alignment:
Q  73 aggcaatgtccattcaacaagttgcttcacatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaa 158  Q
    |||||||||||| || ||||||  ||||||||| | |||||||||| |||| | |||||||||||| |  | ||||||||||||||    
T  1842529 aggcaatgtccactccacaagtcccttcacatacttaacatcagaggacaaaatttcagaaatagggagtagtggtaagagctgaa 1842444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 46382859 - 46382975
Alignment:
Q  109 aacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaactccaagtctacattctctatattcaggtggagcaaaccaaagtccactt 208  Q
    ||||||| | ||||| |||||||||||||||| |||||||||||||||||  ||||| |||| |||  |  | | || |||| ||||||| || |||||     
T  46382859 aacatcacaaaacaagacttcagaaataggaaacaatggtaagagctgaatcccaaggctacgttccttccacttagctggaccaaaccatagaccactg 46382958  T
Q  209 tctctcttgttagacca 225  Q
    ||||| |||||||||||    
T  46382959 tctcttttgttagacca 46382975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 9666155 - 9666042
Alignment:
Q  1 cttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttgcttc 100  Q
    ||||||||||||||| || |||||||| | ||| || ||||| |||||| |||  |||||   || |||||||| || |  ||| || ||||||||||||    
T  9666155 cttatcataaattccctgcaaagcatacaaaaaacccttccaaccttctccaatgccatcctcttccaaagcagacactcgccactcgacaagttgcttc 9666056  T
Q  101 acatattcaacatc 114  Q
    ||||| ||||||||    
T  9666055 acataatcaacatc 9666042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 13537179 - 13537066
Alignment:
Q  1 cttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaacaccatctcttttcaaagcaggcaatgtccattcaacaagttgcttc 100  Q
    ||||||||||||||| || |||||||| | ||| || ||||| |||||| |||  |||||   || |||||||| || |  ||| || ||||||||||||    
T  13537179 cttatcataaattccctgcaaagcatacaaaaaacccttccaaccttctccaatgccatcctcttccaaagcagacactcgccactcgacaagttgcttc 13537080  T
Q  101 acatattcaacatc 114  Q
    ||||| ||||||||    
T  13537079 acataatcaacatc 13537066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 35244662 - 35244581
Alignment:
Q  182 tcaggtggagcaaaccaaagtccactttctctcttgttagaccatagaaatcccattatcctgttctcttttgtaaactctt 263  Q
    |||| |||||||||| | || ||||| || ||||| |||||||| | || |||||| ||||| |||||||||||||| ||||    
T  35244662 tcagttggagcaaacaagagaccactatccctcttattagaccacaaaactcccatgatcctattctcttttgtaaaatctt 35244581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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