View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16864_low_3 (Length: 240)
Name: NF16864_low_3
Description: NF16864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16864_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 44924239 - 44924010
Alignment:
| Q |
1 |
tttatactagttagttggatgatacagtctgtgatttgtactcctcctgacattttaatcacaaattaaggttggttttgaattatctgttattgttttc |
100 |
Q |
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| T |
44924239 |
tttatactagttagttggatgatatagtctgtgatttgtactcctcctgacattttaatcacaaattaaggttggttttgaattatctgttattgttttc |
44924140 |
T |
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| Q |
101 |
gtttcatcctcctgataaaaacaactgtttgtgtattgtttattctagtatcctgggactgttggtagaaactcaaatccggctcaagttccttccttaa |
200 |
Q |
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| T |
44924139 |
ttttcatcctcctgataaaaacaactgtttgtgtgttgtttattctagtatcctgggactgttggtagaaactcaaatccggcacaagttccttccttaa |
44924040 |
T |
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| Q |
201 |
tataaaaatattagttcaatcaaatctgtg |
230 |
Q |
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| T |
44924039 |
tataaaaatattagttcaatcaaatctgtg |
44924010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 29515060 - 29515124
Alignment:
| Q |
76 |
ttttgaattatctgttattgttttcgtttcatcctcctgataaaaacaactgtttgtgtattgtt |
140 |
Q |
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| T |
29515060 |
ttttgaattacttgttgctgtattcttttcatcctcctgataaaaacaactgtttgtgtgttgtt |
29515124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 29514922 - 29514984
Alignment:
| Q |
4 |
atactagttagttggatgatacagtctgtgatttgtactcctcctgacattttaatcacaaat |
66 |
Q |
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|||| ||||||||| |||||| ||| |||||||||||| || | ||||||||||| ||||||| |
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| T |
29514922 |
atacaagttagttgaatgatatagtttgtgatttgtacaccacttgacattttaaacacaaat |
29514984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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