View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16865_high_2 (Length: 447)
Name: NF16865_high_2
Description: NF16865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16865_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 55172401 - 55171981
Alignment:
| Q |
11 |
cacagattatggatggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctatcataaattaa |
110 |
Q |
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| T |
55172401 |
cacagattatggatggtacaccaccaggtgaggattcattcattcaaccttaattaaatttgaaatatgcaactcattccccacatctatcataaattat |
55172302 |
T |
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| Q |
111 |
ttatggtttttctaatgcagctttgagttgggtccagaagacttgccaaagaagagtgcaattcttcgtattatgagtcttggacacacactatccgcat |
210 |
Q |
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| T |
55172301 |
ttatggtttttctaatgcagctttgagttgggtccagaagacttgccaaagaagagtgcaattcttcgtattatgagtcttggacacacactatccgcat |
55172202 |
T |
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| Q |
211 |
ttgttaatggacaatacattggtaagaacataatttcaataataaacggcaatggtgagtgagaggagaggaaatggcaagagttttatatgattctaac |
310 |
Q |
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| T |
55172201 |
ttgttaatggacaatacattggtaagaacataatttcaataataaacgacaatggtgagtgataggagaggaaatggcaagagttttatatgattctaac |
55172102 |
T |
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| Q |
311 |
tttgatttgtaataggtactgatcatggtacccatgaagaaaaatcttttgaatttgagcaaccagctaacttcaaggttggaaccaactacatttccat |
410 |
Q |
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| T |
55172101 |
tttgatttgtaataggtactgatcatggtacccatgaagaaaaatcttttgaatttgagcaaccagctaacttcaaggttggaaccaactacatttccat |
55172002 |
T |
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| Q |
411 |
cttggctaccactgttggact |
431 |
Q |
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| T |
55172001 |
cttggctaccactgttggact |
55171981 |
T |
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