View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16865_low_1 (Length: 505)
Name: NF16865_low_1
Description: NF16865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16865_low_1 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: scaffold0620 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 1607 - 1142
Alignment:
| Q |
1 |
tgtggactttgttcatgtgtttcctacattacaaaggtactcatgcccattactttgtatttcatgttaagtgttaaacactagatgttttaatgagata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1607 |
tgtggactttgttcatgtgtttcctacattacaaaggtattcatgcccattactttgtatttcatgttaagtgttaaacaccggatgttttaatgagata |
1508 |
T |
|
| Q |
101 |
gagtaccttttgtgctcccatttaataaaatttcttgcttatnnnnnnnn-ttaaaagatagtatcatgttgatttgtgtcctcactgactatctgttca |
199 |
Q |
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| T |
1507 |
gagtaccttttgtgctcccattttataaaatttattgcttataaaaaaaaattaaaagatagtatcatgttgatttgtgtcctcagtgactatctgttca |
1408 |
T |
|
| Q |
200 |
attctggttcaatcacaattgtaactaaaacaattgtctttattggattaatgacgggtatggttttcaaacattgattttttgtatggttaataatgat |
299 |
Q |
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| T |
1407 |
attctggttcaaccacaattgtaactaaaacgattgtctttattggattaatgactggtatggattttaaacattgattttttgtatggttaataatgat |
1308 |
T |
|
| Q |
300 |
ccgaaccaactcaaaaatatctcaagatttgatttagtaactaatttgttaaacgtgattcatcaaattagtctaatctaagttgacaaataatctcgtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||| |
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| T |
1307 |
ccgaaccaactcaaaaatatctcaagatttgatttagtaactaatttgttaaacgtgattcatcaaattagtctaacctaaattgaccaataaactcgtt |
1208 |
T |
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| Q |
400 |
aataaatgagttgaacttgaattatgtattattcaattttttatgttatgagccaaatcaatatgt |
465 |
Q |
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| T |
1207 |
aataaatgagttgaacttgaattatgcattattcaattttttatgttatgagccaaatcaatatgt |
1142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 34088154 - 34087689
Alignment:
| Q |
1 |
tgtggactttgttcatgtgtttcctacattacaaaggtactcatgcccattactttgtatttcatgttaagtgttaaacactagatgttttaatgagata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34088154 |
tgtggactttgttcatgtgtttcctacattacaaaggtattcatgcccattactttgtatttcatgttaagtgttaaacaccggatgttttaatgagata |
34088055 |
T |
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| Q |
101 |
gagtaccttttgtgctcccatttaataaaatttcttgcttatnnnnnnnn-ttaaaagatagtatcatgttgatttgtgtcctcactgactatctgttca |
199 |
Q |
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| T |
34088054 |
gagtaccttttgtgctcccattttataaaatttattgcttataaaaaaaaattaaaagatagtatcatgttgatttgtgtcctcagtgactatctgttca |
34087955 |
T |
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| Q |
200 |
attctggttcaatcacaattgtaactaaaacaattgtctttattggattaatgacgggtatggttttcaaacattgattttttgtatggttaataatgat |
299 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
34087954 |
attctggttcaaccacaattgtaactaaaacgattgtctttattggattaatgactggtatggattttaaacattgattttttgtatggttaataatgat |
34087855 |
T |
|
| Q |
300 |
ccgaaccaactcaaaaatatctcaagatttgatttagtaactaatttgttaaacgtgattcatcaaattagtctaatctaagttgacaaataatctcgtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||| |
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| T |
34087854 |
ccgaaccaactcaaaaatatctcaagatttgatttagtaactaatttgttaaacgtgattcatcaaattagtctaacctaaattgaccaataaactcgtt |
34087755 |
T |
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| Q |
400 |
aataaatgagttgaacttgaattatgtattattcaattttttatgttatgagccaaatcaatatgt |
465 |
Q |
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| T |
34087754 |
aataaatgagttgaacttgaattatgcattattcaattttttatgttatgagccaaatcaatatgt |
34087689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 34095433 - 34095372
Alignment:
| Q |
52 |
actttgtatttcatgttaagtgttaaacactagatgttttaatgagatagagtaccttttgt |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
34095433 |
actttgtatttcatgttaagtgttaaacactatatgttttaatggaatagagtacctcttgt |
34095372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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