View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16865_low_3 (Length: 416)
Name: NF16865_low_3
Description: NF16865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16865_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 187 - 415
Target Start/End: Original strand, 2141359 - 2141588
Alignment:
| Q |
187 |
taaacctgttgctcaaatgctaagcaatgcctcttgacctcctcctcatagaatgccttgtcaagcatctggctctctccataggataacttggcgaaaa |
286 |
Q |
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| T |
2141359 |
taaacctgttgctcaaatgctaagcaatgcctcttgacctcttcctcatagaatgccttgtcaagcatctggctctctccatacgataacttcgcaaaga |
2141458 |
T |
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| Q |
287 |
ttgattgataaggagggtatttttccataacagcacaaacctacacgagtaaccatgtaaattaattaaggcccaaaaagcacaacaacaagatctcaac |
386 |
Q |
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| T |
2141459 |
tagattgataaggagggtatttttccatgacagcacgaacctacacgagcaaccatgtaagagaattaaggcccaaaaagcacaactacaagaaatcaac |
2141558 |
T |
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| Q |
387 |
tagaaagaagtgg-atgttataaacaacta |
415 |
Q |
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|||||| |||||| || ||| ||||||||| |
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| T |
2141559 |
tagaaataagtggcatattacaaacaacta |
2141588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 189 - 413
Target Start/End: Original strand, 2101830 - 2102051
Alignment:
| Q |
189 |
aacctgttgctcaaatgctaagcaatgcctcttgacctcctcctcatagaatgccttgtcaagcatctggctctctccataggataacttggcgaaaatt |
288 |
Q |
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| T |
2101830 |
aacctgttgctcaaatgctaagcaatgcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgataacttcgcaaagata |
2101929 |
T |
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| Q |
289 |
gattgataaggagggtatttttccataacagcacaaacctacacgagtaaccatgtaaattaattaaggcccaaaaagcacaacaacaagatctcaacta |
388 |
Q |
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| T |
2101930 |
gattgat---gagggtatttttccataacagcacgaacctacgcgagcaaccatgtaaaagaattaaggctaaaaaagcaatactaaaagaaatcaacta |
2102026 |
T |
|
| Q |
389 |
gaaagaagtggatgttataaacaac |
413 |
Q |
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|||| ||||||||||||| ||||| |
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| T |
2102027 |
gaaatcagtggatgttatagacaac |
2102051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 189 - 335
Target Start/End: Original strand, 2076195 - 2076341
Alignment:
| Q |
189 |
aacctgttgctcaaatgctaagcaatgcctcttgacctcctcctcatagaatgccttgtcaagcatctggctctctccataggataacttggcgaaaatt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| || || || |
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| T |
2076195 |
aacctgttgctcaaatgctaagcaatgcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgataacttcgcaaagata |
2076294 |
T |
|
| Q |
289 |
gattgataaggagggtatttttccataacagcacaaacctacacgag |
335 |
Q |
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| T |
2076295 |
gattgataaggagggtatttttccataacagcacgaacctacgcgag |
2076341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 188 - 368
Target Start/End: Original strand, 2117132 - 2117316
Alignment:
| Q |
188 |
aaacctgttgctcaaatgctaagcaatgcctcttgacctcctcctcataga----atgccttgtcaagcatctggctctctccataggataacttggcga |
283 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||||||||||||| | |||||||||||||||| ||||||||||| |||||||| | | |
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| T |
2117132 |
aaacctgttgctcaaatgctaagcaattcttcttgacttcctcctcatagatttccttccttgtcaagcatctgactctctccatacgataacttatcaa |
2117231 |
T |
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| Q |
284 |
aaattgattgataaggagggtatttttccataacagcacaaacctacacgagtaaccatgtaaattaattaaggcccaaaaagca |
368 |
Q |
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| T |
2117232 |
agatggattgataaggagggcatttttccataacagcacgaacctacacgagcaaccatttaagagaattaaggctcaaaaagca |
2117316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 187 - 312
Target Start/End: Original strand, 653894 - 654020
Alignment:
| Q |
187 |
taaacctgttgctcaaatgctaagcaatgcct-cttgacctcctcctcatagaatgccttgtcaagcatctggctctctccataggataacttggcgaaa |
285 |
Q |
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||||||||||| |||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |
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| T |
653894 |
taaacctgttggtcaaatgctaagcaattacttcttgacctcctcctcctagaatgccttgtcaagcatctgactctctccatatgataacttggcaaaa |
653993 |
T |
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| Q |
286 |
attgattgataaggagggtatttttcc |
312 |
Q |
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|| |||||||||| | ||||||||||| |
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| T |
653994 |
atagattgataagtaaggtatttttcc |
654020 |
T |
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