View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16866_low_2 (Length: 319)

Name: NF16866_low_2
Description: NF16866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16866_low_2
NF16866_low_2
[»] chr7 (4 HSPs)
chr7 (20-313)||(35523724-35524017)
chr7 (231-313)||(35518126-35518208)
chr7 (52-124)||(43359083-43359155)
chr7 (179-207)||(37025637-37025665)
[»] chr1 (4 HSPs)
chr1 (74-125)||(15066041-15066092)
chr1 (75-125)||(34311235-34311285)
chr1 (51-120)||(13276472-13276541)
chr1 (52-125)||(19989347-19989419)
[»] chr3 (3 HSPs)
chr3 (75-124)||(46135636-46135685)
chr3 (179-207)||(23045331-23045359)
chr3 (53-125)||(48034808-48034879)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 35524017 - 35523724
Alignment:
Q  20 cctctgccaaatcaaccgtatcaacttttcataggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtg 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35524017 cctctgccaaatcaaccgtatcaacttttcgtaggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtatgtg 35523918  T
Q  120 agagacnnnnnnnnctaaatttcttttgtgtgtgaactctcagccaaaagaaggacgtattgggtgagagttcacctaagaatttctcatagatagtgtg 219  Q
    ||||||         ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35523917 agagacaaaaaaaattaaatttcttttgtgtgtgaactctcacccaaaagaagaacgtattgggtgagagttcacctaagaatttctcatagatagtgtg 35523818  T
Q  220 acaaagtaagaggttgtgagtgttaacctgtgtggagaagaagtgacggcaaagtcctcccaacggttttcacgacggtgccatttgatgatgt 313  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  35523817 acaaagaaagaggttgtgagtgttaacctgtgtggagaagaagtgacggcaaagtcctcccaacggttttgatgatggtgccatttgatgatgt 35523724  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 231 - 313
Target Start/End: Complemental strand, 35518208 - 35518126
Alignment:
Q  231 ggttgtgagtgttaacctgtgtggagaagaagtgacggcaaagtcctcccaacggttttcacgacggtgccatttgatgatgt 313  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||    
T  35518208 ggttgagagtgttaacctgtgtgaagaagaagtgacggcaaagtccacccaacggttctcatgacggtgccatttgatgatgt 35518126  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 43359155 - 43359083
Alignment:
Q  52 aggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagaga 124  Q
    |||||||||||| ||||||  | |||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  43359155 aggataatgtttcattgacaccattttctccatacacacaatgtatcaccctcatgtgagagtgtgtgagaga 43359083  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 37025637 - 37025665
Alignment:
Q  179 ttgggtgagagttcacctaagaatttctc 207  Q
    |||||||||||||||||||||||||||||    
T  37025637 ttgggtgagagttcacctaagaatttctc 37025665  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 15066041 - 15066092
Alignment:
Q  74 cttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac 125  Q
    ||||| |||||||| |||||||||||  |||||| |||||||||||||||||    
T  15066041 cttttttccatacatacaatgtaccactctcatgtgagagtgtgtgagagac 15066092  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 34311235 - 34311285
Alignment:
Q  75 ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac 125  Q
    ||||||||||||||| ||||||||| ||||| | ||||||| |||||||||    
T  34311235 ttttctccatacacataatgtaccaccctcacgtgagagtgcgtgagagac 34311285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 13276472 - 13276541
Alignment:
Q  51 taggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtga 120  Q
    ||||||||||||| ||  ||  |||||||||||||||||| ||||||||  | |||| ||||||||||||    
T  13276472 taggataatgtttcatgaacacccttttctccatacacactatgtaccactcccatgtgagagtgtgtga 13276541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 19989419 - 19989347
Alignment:
Q  52 aggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac 125  Q
    |||||||||||| || |||   |||||||| ||||||||| |||||||  |||||| |||||||||||||||||    
T  19989419 aggataatgtttcatagacactcttttctc-atacacacattgtaccactctcatgtgagagtgtgtgagagac 19989347  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 46135685 - 46135636
Alignment:
Q  75 ttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagaga 124  Q
    ||||||||||||||||| ||||||| ||  ||| ||||||||||||||||    
T  46135685 ttttctccatacacacattgtaccacccctatgtgagagtgtgtgagaga 46135636  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 207
Target Start/End: Original strand, 23045331 - 23045359
Alignment:
Q  179 ttgggtgagagttcacctaagaatttctc 207  Q
    |||||||||||||||||||||||||||||    
T  23045331 ttgggtgagagttcacctaagaatttctc 23045359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 48034808 - 48034879
Alignment:
Q  53 ggataatgttttattgactaccttttctccatacacacaatgtaccatcctcatgggagagtgtgtgagagac 125  Q
    ||||||||||||||  ||   ||||| |||||||||||| ||||||| | ||||| |||||||||||||||||    
T  48034808 ggataatgttttatgtacacacttttttccatacacacattgtacca-cttcatgtgagagtgtgtgagagac 48034879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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