View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16867_low_3 (Length: 229)
Name: NF16867_low_3
Description: NF16867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16867_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 6033380 - 6033576
Alignment:
| Q |
15 |
atgaatgaaaagaaaaggaatgagctaatctaaatagaaagaaataacaacattcttcaacaaccaaattaatcatcatgggttcggtagaacgagggaa |
114 |
Q |
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| T |
6033380 |
atgaatgaaaagaaaaggaatgagctaatctaaatagaaagaaataacaacgttcttcaacaaccaaattaatcatcatgggttcggtagaacgagggaa |
6033479 |
T |
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| Q |
115 |
gatccattggagcgtatacgacggcgtaaagataatcgctgcaacaccagaagctctgatgtcagaaattgattcagcaatttcgaatctggaatat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6033480 |
gatccattggagcgtatacgacggcgtaaagataatcgctgcaacaccagaagctctgatgtcagaaattgattcagcaatttcgaatctggaatat |
6033576 |
T |
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